R Observatory: Metrics for simIDM version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

simIDM

0.1.1Package record

Simulating Oncology Trials using an Illness-Death Model

0packages depend

2.7Kdownloads / year

97.1%test coverage

13/13flavors OK

Overview

About

Maintained by Daniel Sabanés BovéCRAN page ↗GitHub ↗Issues ↗Declared funders: F. Hoffmann-La Roche AG and University of Ulm

Based on the illness-death model a large number of clinical trials with oncology endpoints progression-free survival (PFS) and overall survival (OS) can be simulated, see Meller, Beyersmann and Rufibach (2019) doi:10.1002/sim.8295. The simulation set-up allows for random and event-driven censoring, an arbitrary number of treatment arms, staggered study entry and drop-out. Exponentially, Weibull and piecewise exponentially distributed survival times can be generated. The correlation between PFS and OS can be calculated.

Changes in 0.1.1

Bug Fixes

corPFSOS now undoes the future plan upon function exit.

Miscellaneous

Change of maintainer.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("simIDM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("insightsengineering/simIDM")

Development version from insightsengineering/simIDM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-simidm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-simIDM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-simIDM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 13.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

README· In the repository, left out of the releaseVignettesYes · 4 · dynamicNEWSYes · 100% structured · mentions 0.1.1Citation fileNo

Help pages: 60 (8 internal)includes a package overview page
Examples that run: 100%52 run in a plain check
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (4)

Correlation between PFS and OS HTML
Getting Started HTML
Piecewise Constant Hazards Calculations HTML
Power and Type I Error Calculations HTML

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #15,838 · ~8/day · ~229/mo

Releases R versions

Daily download trend is not available in this view yet.

31230 days

77590 days

2.7K1 year

Compare downloads with other packages →

Also on75 r2u2 autocran

How downloads are counted

Repository

insightsengineering/simidm ↗Organization: insightsengineering

14Stars

2Forks

0Open issues

0Open PRs

2Releases

147Commits

11Commit identities

simulation-enginermultistate-models

147 commits · Last activity 2026-07-08 · 0% stars, 30d · Default branch at 0.1.1.9000, ahead of CRAN 0.1.1 (checked 2026-10-18)

Responsiveness

How these are sampled

PRs merged (all time): 99%
Median days to close, 50 most recently updated closed issues: 14
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2024-10-23 · 132026-07-07 · 14

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/insightsengineering/simidm on 2026-10-18.

Continuous integration (1)

GitHub Actions

Governance and community (6)

Code of conduct (inherited from insightsengineering)Contributing guide (inherited from insightsengineering)Issue templatesPR templateCODEOWNERS

Funding links: pharmaverse.org

Docs source (2)

pkgdown

GitHub Pages site last deployed 2026-07-08

Coverage (1)

Coverage reporting

Show all practicesHide 3 practices

CRAN release process (1)

revdep/

Automation and maintenance (1)

pre-commit

Lint, format, editor (2)

lintrRStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing simIDM adds 19 packages (12 with compiled code, 13 MB of source tarballs). Heaviest: data.table 5.7 MB, viridisLite 1.2 MB, vctrs 1.0 MB.

Depends (1)

R >= 3.6

Imports (7)

checkmate furrr future mstate parallellystatssurvival

LinkingTo (0)

none

Suggests (7)

coxphw knitr mvna prodlim rmarkdown rpact testthat (>= 3.0.0)

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (6)

Daniel Sabanés Bové

Author, Maintainer since 0.1.1 (2026) · added in 0.1.0

Alexandra Erdmann

Author

Holger Löwe

Author · added in 0.1.0

Kaspar Rufibach

Author

F. Hoffmann-La Roche AG

Copyright holder, Funder

University of Ulm

Copyright holder, Funder

Previously maintained by Alexandra Erdmann (0.0.5 to 0.1.0).

Listed in earlier versions (1)

Daniel Sabanes Bove

no longer listed · 0.0.5

Releases (3)

Pick two releases to compare their code metrics.

0.1.1Latest
record
2026-07-08 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.0
record
2023-12-11 · diff ↗ ·
removed 4 exports
PwcOSInt, WeibOSInteg, getPCWHazard, integrateVector

added 24 exports
ExpHazOS, ExpQuantOS, avgHRExpOS, avgHRIntegExpOS, corPFSOS, corTrans, empSignificant, estimateParams, expvalOSInteg, expvalPFSInteg, getInit, getPWCHazard, getResults, getTarget, haz, logRankTest, log_p11, negLogLik, passedLogRank, prepareData, survOS, survPFS, survPFSOS, survTrans
R
R 4.3.0 released · 2023-04-21
0.0.5
record
2023-01-27
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-01-27
Total releases: 3 / 3 yrs
License: Apache License 2.0 OSI
Minimum R: ≥ 3.6
Download size: 406 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("simIDM")

Format

Sabanés Bové, D., F. Hoffmann-La Roche AG, University of Ulm, Erdmann, A., Löwe, H., & Rufibach, K. (2026). simIDM: Simulating Oncology Trials using an Illness-Death Model (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.simIDM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for simIDM version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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