shinyExprPortal

1.2.1

A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data

0packages depend

2.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Rafael HenkinFirst published 2023-09-255 releasesCRAN page ↗GitHub ↗

Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("shinyExprPortal", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("C4TB/shinyExprPortal")

Development version from C4TB/shinyExprPortal. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-shinyexprportal

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.27

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-08
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-07
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 489 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.8K

CRAN downloads in the past year

Rank #16,947 · ~8/day · ~234/mo

Releases R versions

Daily download trend is not available in this view yet.

21230 days

68390 days

2.8K1 year

Compare downloads with other packages →

Also on150 r2u

Repository

GitHub ↗ c4tb/shinyexprportal

5Stars

1Forks

4Open issues

0Open PRs

5Releases

198Commits

2Contributors

bioinformaticsdata-analysisr-packagetranscriptomics

198 commits · Last activity 2025-03-12

Stars over time

2024-10-23 · 52026-07-07 · 5

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/c4tb/shinyexprportal on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (20)

configstatsutilsshiny htmltools markdown cli dplyr tidyr yaml data.table bslib iheatmapr vegawidget DT qvalueparallelRfast rlang shinyhelper

LinkingTo (0)

none

Suggests (7)

testthat whisker knitr rmarkdown r2d3 kableExtra RColorBrewer

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 7,978 (86%)Vignettes 1,131 (12%)Rd 188 (2%)

Code characteristics

Cyclomatic complexity: 2.0 median / 25 max
Test cases: 69 / 0.27 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

136 6 exported

Complexity

2.9 avg / 25 max

Call network

136 nodes / 158 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Rafael Henkin

Maintainer, Author, Copyright holder

Authors (1)

Rafael Henkin

Maintainer, Author, Copyright holder

Rafael Henkin

Maintainer, Author, Copyright holder

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.2.1Latest
2024-07-29 · current release · diff ↗
1.2.0
2024-07-26 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.0
2024-02-06 · diff ↗
1.0.1
2023-11-08 · diff ↗
1.0.0
2023-09-25
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-09-25
Total releases: 5 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 3.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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