R Observatory: Metrics for shar version 2.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

shar

2.3.1

Species-Habitat Associations

0packages depend

3.5Kdownloads / year

88.9%test coverage

13/13checks pass

Overview

About

Maintained by Maximilian H.K. HesselbarthFirst published 2019-01-2825 releasesCRAN page ↗GitHub ↗

Analyse species-habitat associations in R. Therefore, information about the location of the species (as a point pattern) is needed together with environmental conditions (as a categorical raster). To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) doi:10.1006/jtbi.2000.2158 and Harms et al. (2001) doi:10.1111/j.1365-2745.2001.00615.x.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("shar", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("r-spatialecology/shar")

Development version from r-spatialecology/shar. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-shar

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-shar

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-shar

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.30

88.9%

Coverage · measured lines

100%

Documentation · exports

11

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-06-08
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 22%
Documented parameters: 91%
Return-value docs: 100%
References docs: 31%

Downloads

3.5K

CRAN downloads in the past year

Rank #11,883 · ~10/day · ~294/mo

Releases R versions

Daily download trend is not available in this view yet.

17130 days

84790 days

3.5K1 year

Compare downloads with other packages →

Also on112 r2u24 autocran

Repository

GitHub ↗ r-spatialecology/shar

22Stars

11Forks

0Open issues

0Open PRs

25Releases

716Commits

9Contributors

landscape-ecologypoint-pattern-analysisspatial-analysishabitat-association

License GPL-3.0 · 716 commits · Last activity 2025-02-13 · 0% stars, 30d

Stars over time

2025-07-23 · 212026-07-07 · 22

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/r-spatialecology/shar on 2026-08-23.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Research and citation (1)

codemeta.json

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.0

Imports (11)

classIntgraphicsgrDevicesmethodsspatstat.explore spatstat.geom spatstat.model spatstat.randomstatsterrautils

LinkingTo (0)

none

Suggests (6)

covr dplyr knitr rmarkdown spatstat testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Maximilian H.K. Hesselbarth

Author, Maintainer · added in 2.0.1

Authors (3)

Maximilian H.K. Hesselbarth

Author, Maintainer · added in 2.0.1

Marco Sciaini

Author

Chris Wudel

Author · added in 2.2

Contributors (3)

Thomas Etherington

Contributor · added in 1.3.2

Janosch Heinermann

Contributor · added in 2.0.3

Zeke Marshall

Contributor · added in 1.3.2

Listed in earlier versions (1)

Maximillian H.K. Hesselbarth

no longer listed · 0.1 to 2.0.0

Package Timeline

25 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.3.1Latest
2025-01-10 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
2.3
2024-02-14 · diff ↗
2.2.1
2024-01-09 · diff ↗
2.2
2023-12-21 · diff ↗
2.1.1
2023-10-23 · diff ↗
2.1
2023-10-02 · diff ↗
2.0.4
2023-08-29 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.0.3
2023-03-13 · diff ↗
2.0.2
2022-11-16 · diff ↗
2.0.1
2022-11-01 · diff ↗
2.0.0
2022-09-22 · diff ↗
R
R 4.2.0 released · 2022-04-22

Show 20 earlier events

1.3.2
2022-03-08 · diff ↗
unarchivedReturned to CRAN
2022-03-08
archivedRemoved from CRAN
2022-03-05
check problems were not corrected in time
1.3.1
2022-01-04 · diff ↗
1.3
2021-12-06 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.2.1
2021-05-04 · diff ↗
1.2
2021-03-15 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.1
2019-11-15 · diff ↗
1.0.1
2019-09-10 · diff ↗
1.0
2019-08-08 · diff ↗
0.5
2019-07-09 · diff ↗
0.4
2019-05-27 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.3.1
2019-04-23 · diff ↗
0.3
2019-03-25 · diff ↗
0.2
2019-02-06 · diff ↗
0.1
2019-01-28
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-01-28
Total releases: 25 / 7 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.1.0
Bundled data: 26 KB / 3 files
Download size: 1.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("shar")

Format

Hesselbarth, M. H. K., Etherington, T., Heinermann, J., Marshall, Z., Sciaini, M., & Wudel, C. (2025). shar: Species-Habitat Associations (Version 2.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.shar

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for shar version 2.3.1 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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