serrsBayes

Bayesian Modelling of Raman Spectroscopy

v0.5-0 · Jun 28, 2021 · GPL (>= 2) | file LICENSE

Description

Sequential Monte Carlo (SMC) algorithms for fitting a generalised additive mixed model (GAMM) to surface-enhanced resonance Raman spectroscopy (SERRS), using the method of Moores et al. (2016) <arXiv:1604.07299>. Multivariate observations of SERRS are highly collinear and lend themselves to a reduced-rank representation. The GAMM separates the SERRS signal into three components: a sequence of Lorentzian, Gaussian, or pseudo-Voigt peaks; a smoothly-varying baseline; and additive white noise. The parameters of each component of the model are estimated iteratively using SMC. The posterior distributions of the parameters given the observed spectra are represented as a population of weighted particles.

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r-devel-linux-x86_64-debian-gcc	NOTE	419.1s
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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 12, 2026

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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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as.personList().  Please use c() on person objects instead.
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The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

NOTE r-devel-linux-x86_64-debian-gcc

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Maintainer: ‘Matt Moores <mmoores@gmail.com>’

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as.personList().  Please use c() on person objects instead.
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The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 19.6Mb
  sub-directories of 1Mb or more:
    libs  18.3Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 19.9Mb
  sub-directories of 1Mb or more:
    libs  18.6Mb

ERROR 9 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
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use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
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use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

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Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/serrsBayes.Rcheck/00install.out' for details.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 19.6Mb
  sub-directories of 1Mb or more:
    libs  18.3Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 19.9Mb
  sub-directories of 1Mb or more:
    libs  18.6Mb

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 19.6Mb
  sub-directories of 1Mb or more:
    libs  18.3Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 19.9Mb
  sub-directories of 1Mb or more:
    libs  18.6Mb

Dependency Network

Version History

9 tracked

new 0.5-0 Mar 10, 2026

updated 0.5-0 ← 0.4-2 diff Jun 27, 2021

updated 0.4-2 ← 0.4-1 diff Jun 6, 2021

updated 0.4-1 ← 0.4-0 diff Feb 4, 2020

updated 0.4-0 ← 0.3-13 diff Apr 28, 2019

updated 0.3-13 ← 0.3-12 diff Jun 4, 2018

updated 0.3-12 ← 0.3-11 diff Feb 17, 2018

updated 0.3-11 ← 0.3-10 diff Feb 15, 2018

new 0.3-10 Feb 13, 2018

People

Matt Moores author maintainer
Engineering and Physical Sciences Research Council fnd
University of Warwick cph
Jake Carson author
Karen Faulds dtc
Mark Girolami author
Kirsten Gracie dtc
Benjamin Moskowitz contributor

Available on

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Dependencies

Depends

R (>= 3.5.0)Matrix truncnormsplines

Imports

Rcpp (>= 0.11.3)methods

Suggests

testthat knitr rmarkdown Hmisc

Compilation

Needs compilation

First Published

Feb 13, 2018

First appeared in R 3.4.3 · current R 4.6.1

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