serodynamics

Modeling Longitudinal Antibody Responses to Infection

v0.1.0 · Jun 2, 2026 · MIT + file LICENSE

Description

Implements Bayesian hierarchical models for estimating antibody kinetic parameters from longitudinal serological data. Fits two-phase within-host models capturing antibody rise, peak, and decay following pathogen infection, using 'JAGS' for posterior inference. Designed as the upstream companion to the 'serocalculator' package for end-to-end seroepidemiological analysis. Methods are described in Teunis and colleagues (2016) <doi:10.1016/j.epidem.2016.04.001> and Teunis and van Eijkeren (2020) <doi:10.1002/sim.8578>.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	120s
r-devel-linux-x86_64-debian-gcc	OK	84.4s
r-devel-linux-x86_64-fedora-clang	OK	184.1s
r-devel-linux-x86_64-fedora-gcc	OK	205.4s
r-devel-windows-x86_64	OK	138s
r-oldrel-macos-arm64	OK	41s
r-oldrel-macos-x86_64	OK	132s
r-oldrel-windows-x86_64	OK	183s
r-patched-linux-x86_64	OK	108.1s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	41s
r-release-macos-x86_64	OK	158s
r-release-windows-x86_64	OK	136s

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OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Packages required but not available: 'ggmcmc', 'serocalculator'

Packages suggested but not available for checking: 'Hmisc', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

OK 7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 3, 2026

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new 0.1.0 Jun 2, 2026