sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
v0.4.3
·
Jan 9, 2026
·
GPL-3 | file LICENSE
Description
A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija (2019) <doi:10.1186/s13059-019-1874-1>, and Choudhary and Satija (2022) <doi:10.1186/s13059-021-02584-9> for more details.
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| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
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| r-release-macos-arm64 | OK |
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| r-release-windows-x86_64 | OK |
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NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
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Version History
new
0.4.3
Mar 10, 2026
new
0.1.0
Nov 17, 2018