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RESET

Reconstruction Set Test

v1.0.0 · Mar 6, 2024 · GPL (>= 2)

Description

Contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.

Downloads

CRAN

312

Last 30 days

14686th

742

Last 90 days

2.7K

Last year

Trend: +55.2% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

23

Last 90 days

89

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

8

Last 7 days

20

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code intelligence has not been computed for this package yet.

Code

Structure

Lines of code

1,258

Files

25

Compiled share

0%

Has compiled src

No

Language breakdown

R 664 (52.8%)Docs 482 (38.3%)Vignettes 112 (8.9%)

API

Exported functions

8

Internal functions

2

Recent export changes

v0.2.0+2 convertToPerVarScores, convertToPerVarScoresForSeurat
v0.1.0+6 reset, resetViaPCA, resetForSeurat +3 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

50%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.6.0

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

5

First release

2023-04-07

Latest release

2024-03-06

Avg cadence

68 days

Cold removal rate

Dep drift

0

LOC over versions

v0.1.0: 1,017 LOCv0.2.0: 1,239 LOCv0.2.1: 1,239 LOCv0.2.2: 1,248 LOCv1.0.0: 1,258 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies Matrix RESET

Version History

6 tracked
new 1.0.0 Mar 10, 2026
updated 1.0.0 ← 0.2.2 diff Mar 6, 2024
updated 0.2.2 ← 0.2.1 diff Mar 2, 2024
updated 0.2.1 ← 0.2.0 diff Aug 19, 2023
updated 0.2.0 ← 0.1.0 diff Aug 6, 2023
new 0.1.0 Apr 6, 2023