R Observatory: Metrics for scrime version 1.3.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

scrime

1.3.7Package record

Analysis of High-Dimensional Categorical Data Such as SNP Data

0packages dependsuggested by 1

86.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Holger SchwenderCRAN page ↗

Tools for the analysis of high-dimensional data developed/implemented at the group "Statistical Complexity Reduction In Molecular Epidemiology" (SCRIME). Main focus is on SNP data. But most of the functions can also be applied to other types of categorical data.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("scrime", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-scrime

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-scrime

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-scrime

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.7

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 38 (1 internal)
Examples that run: 0%29 never run
Exported functions with examples: 75%
Documented parameters: 100%
Return-value docs: 92%
Help pages citing references: 45%

How these are measured

Downloads

86.5K

CRAN downloads in the past year

Rank #1,201 · ~237/day · ~7.2K/mo

Releases R versions

Daily download trend is not available in this view yet.

8K30 days

27.4K90 days

86.5K1 year

Compare downloads with other packages →

Also on1.9K r2u2 autocran7.7K conda_forge

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing scrime adds no packages beyond those that come with R.

Depends (0)

none

Imports (3)

methodsstatsutils

LinkingTo (0)

none

Suggests (4)

MASSRSQLite oligoClasses DBI

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

BayesSUR

How these are counted

Code & Tests

People & History

People (2)

Holger Schwender

Author, Maintainer since 1.0.0 (2008)

Arno Fritsch

Contributor

Listed in earlier versions (3)

Show 3 peopleHide 3 people

with contributions from Arno Fritsch

no longer listed · 1.2.0

with a contribution of Arno Fritsch

no longer listed · 1.2.1 to 1.3.5

Fritsch

no longer listed · 1.3.7

Releases (17)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.3.7Latest
record
2026-01-25 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.3.5
record
2018-12-01 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.3.3
record
2013-09-02 · diff ↗

Show 25 earlier eventsHide 25 earlier events

R
R 3.0.0 released · 2013-04-03
1.3.2
record
2013-03-14 · diff ↗
1.2.9
record
2012-10-03 · diff ↗
R
R 2.15.0 released · 2012-03-30
1.2.8
record
2011-11-02 · diff ↗
R
R 2.14.0 released · 2011-10-31
1.2.6
record
2011-06-09 · diff ↗ ·
added 1 export
rowEpistatic
R
R 2.13.0 released · 2011-04-13
1.2.5
record
2011-03-29 · diff ↗ ·
added 3 exports
abf, rowTrendFuzzy, getMatFuzzy
R
R 2.12.0 released · 2010-10-15
1.2.1
record
2010-07-29 · diff ↗ ·
added 1 export
colEpistatic
1.2.0
record
2010-04-28 · diff ↗ ·
removed 1 export
print.simSNPcatResponse

added 2 exports
rowMAFs, rowHWEs
R
R 2.11.0 released · 2010-04-22
1.1.9
record
2009-11-01 · diff ↗
R
R 2.10.0 released · 2009-10-26
1.1.7
record
2009-10-14 · diff ↗
1.1.6
record
2009-05-19 · diff ↗
1.1.4
record
2009-05-11 · diff ↗
R
R 2.9.0 released · 2009-04-17
1.1.2
record
2009-01-27 · diff ↗ ·
added 11 exports
rowCATTs, rowChisq2Class, rowChisqMultiClass, rowCors, rowFreqs, rowMsquares, rowScales, rowTables, rowTrendStats, buildSNPannotation, shortenGeneDescription
1.0.7
record
2009-01-09 · diff ↗ ·
added 4 exports
identifyMonomorphism, simulateSNPcatResponse, print.simSNPcatResponse, showChanges
R
R 2.8.0 released · 2008-10-20
R
R 2.7.0 released · 2008-04-22
1.0.0
record
2008-01-16
R
R 2.6.0 released · 2007-10-03

Package metadata

First published: 2008-01-16
Total releases: 17 / 18 yrs
License: GPL-2 OSI
Download size: 69 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("scrime")

Format

Schwender, H., & Fritsch, A. (2026). scrime: Analysis of High-Dimensional Categorical Data Such as SNP Data (Version 1.3.7) [Computer software]. https://doi.org/10.32614/CRAN.package.scrime

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for scrime version 1.3.7 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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