This package was removed from CRAN on 2026-02-21. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 1.0, its last release before removal.

scRNAtools

1.0

Single Cell RNA Sequencing Data Analysis Tools

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Qian Yang1 releasesCRAN page ↗

We integrated the common analysis methods utilized in single cell RNA sequencing data, which included cluster method, principal components analysis (PCA), the filter of differentially expressed genes, pathway enrichment analysis and correlated analysis methods.

Install

R (source archive)Ubuntu (r2u)

url <- "https://cran.r-project.org/src/contrib/Archive/scRNAtools/scRNAtools_1.0.tar.gz"
pkgFile <- "scRNAtools_1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-scrnatools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

CRAN check results are not tracked yet.

Documentation

Documentation signals are not tracked yet for this package.

Downloads

scRNAtools Releases R versions

Daily download trend is not available in this view yet.

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Also on127 r2u

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (3)

R >= 2.10foreach base

Imports (18)

ALL ConsensusClusterPlus scatterplot3d ggplot2 Rtsne limma edgeR TPEA Rmisclatticeplyr ggthemes reshape2 PerformanceAnalytics corrplot Hmisc igraphsurvival

LinkingTo (0)

none

Suggests (1)

grid

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Other (1)

Qian Yang

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-02-21
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.0
2018-07-05
R
R 3.5.0 released · 2018-04-23

Package metadata

Total releases: 1
License: GPL-2 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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