R Observatory: Metrics for scPOP version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-12-05. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 0.1.0, its last release before removal.

scPOP

0.1.0Package record

Metrics for Benchmarking scRNA-Seq Batch Correction

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Vinay SwamyCRAN page ↗

Evaluate batch effect correction algorithms for scRNA-seq using multiple established methods, including the Adjusted Rand Index, Normalized Mutual Information, Local Inverse Simpson Index, and Silhouette Width. Methods for aggregating and weighing multiple metrics together are also included. For further explanation of methods, see Swamy et al. (2021)doi:10.1101/2021.03.26.437190 .

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/scPOP/scPOP_0.1.0.tar.gz"
pkgFile <- "scPOP_0.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 685 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 10includes a package overview page
Examples that run: 86%6 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 86%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on270 r2u5 autocran

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (4)

RcppMatrixRANNcluster

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Vinay Swamy

Author, Maintainer since 0.1.0 (2021)

David McGaughey

Author

Releases (1)

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-12-05
issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
0.1.0
record
2021-08-04
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-08-04
Total releases: 1 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 657 KB / 1 file

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("scPOP")

Format

Swamy, V., & McGaughey, D. (n.d.). scPOP: Metrics for Benchmarking scRNA-Seq Batch Correction (Version 0.1.0) [Computer software]. Retrieved October 24, 2026, from https://CRAN.R-project.org/package=scPOP

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for scPOP version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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