scBSP
A Fast Tool for Single-Cell Spatially Variable Genes Identifications on Large-Scale Data
v1.1.0
·
Sep 1, 2025
·
GPL (>= 2)
Description
Identifying spatially variable genes is critical in linking molecular cell functions with tissue phenotypes. This package utilizes a granularity-based dimension-agnostic tool, single-cell big-small patch (scBSP), implementing sparse matrix operation and KD tree methods for distance calculation, for the identification of spatially variable genes on large-scale data. The detailed description of this method is available at Wang, J. and Li, J. et al. 2023 (Wang, J. and Li, J. (2023), <doi:10.1038/s41467-023-43256-5>).
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