R Observatory: Metrics for santaR version 1.2.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

santaR

1.2.4

Short Asynchronous Time-Series Analysis

0packages depend

2.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Arnaud WolferFirst published 2018-01-245 releasesCRAN page ↗GitHub ↗

A graphical and automated pipeline for the analysis of short time-series in R ('santaR'). This approach is designed to accommodate asynchronous time sampling (i.e. different time points for different individuals), inter-individual variability, noisy measurements and large numbers of variables. Based on a smoothing splines functional model, 'santaR' is able to detect variables highlighting significantly different temporal trajectories between study groups. Designed initially for metabolic phenotyping, 'santaR' is also suited for other Systems Biology disciplines. Command line and graphical analysis (via a 'shiny' application) enable fast and parallel automated analysis and reporting, intuitive visualisation and comprehensive plotting options for non-specialist users.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("santaR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("adwolfer/santaR")

Development version from adwolfer/santaR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-santar

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 4.7 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.68

not tracked

Coverage

100%

Documentation · exports

11

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 891 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 81%
Documented parameters: 100%
Return-value docs: 100%
References docs: 11%

Downloads

2.8K

CRAN downloads in the past year

Rank #13,091 · ~8/day · ~234/mo

Releases R versions

Daily download trend is not available in this view yet.

21530 days

78890 days

2.8K1 year

Compare downloads with other packages →

Also on140 r2u

Repository

GitHub ↗ adwolfer/santar

11Stars

0Forks

2Open issues

0Open PRs

0Releases

66Commits

3Contributors

License GPL-3.0 · 66 commits · Last activity 2024-03-06

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/adwolfer/santar on 2026-08-23.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2

Imports (11)

plyr foreach doParallel pcaMethods ggplot2 gridExtra reshape2 iterators shiny bslib DT

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown pander R.rsp testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Arnaud Wolfer

Author, Maintainer

Authors (1)

Arnaud Wolfer

Author, Maintainer

Contributors (2)

Joe Cheng

Contributor

Timothy Ebbels

Contributor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.4Latest
2024-03-07 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
1.2.3
2022-05-24 · diff ↗
1.2.2
2022-05-22 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.2.0
2022-04-09 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.0
2018-01-24
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-01-24
Total releases: 5 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.2
Bundled data: 8.2 KB / 1 file
Download size: 2.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("santaR")

Format

Wolfer, A., Cheng, J., & Ebbels, T. (2024). santaR: Short Asynchronous Time-Series Analysis (Version 1.2.4) [Computer software]. https://doi.org/10.32614/CRAN.package.santaR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for santaR version 1.2.4 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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