R Observatory: Metrics for rxode2parse version 2.0.19

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2024-09-23. Its history is shown below.

Reason: the maintainer's request

Details below reflect version 2.0.19, its last release before removal.

rxode2parse

2.0.19

Parsing and Code Generation Functions for 'rxode2'

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Matthew L. Fidler11 releasesCRAN page ↗GitHub ↗

Provides the parsing needed for 'rxode2' (Wang, Hallow and James (2016) doi:10.1002/psp4.12052). It also provides the 'stan' based advan linear compartment model solutions with gradients (Carpenter et al (2015), doi:10.48550/arXiv.1509.07164) needed in 'nlmixr2' (Fidler et al (2019) doi:10.1002/psp4.12445). This split will reduce computational burden of recompiling 'rxode2'.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/rxode2parse/rxode2parse_2.0.19.tar.gz"
pkgFile <- "rxode2parse_2.0.19.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0.19) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("nlmixr2/rxode2parse")

Development version from nlmixr2/rxode2parse. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rxode2parse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-rxode2parse

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 1.19

not tracked

Coverage

100%

Documentation · exports

12

Dependencies · direct

Documentation

READMEYes · 106 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 94%
Documented parameters: 100%
Return-value docs: 100%
References docs: 6%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on375 r2u16 autocran1.5K conda_forge37 c2d4u

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (12)

checkmate crayon dparser knitrmethodsqs Rcpp (>= 1.0.8)utilsdigest rex symengine data.table

LinkingTo (5)

BH dparser Rcpp RcppEigen StanHeaders

Suggests (5)

testthat dplyr nlmixr2data devtools rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (9)

Maintainer (1)

Matthew L. Fidler

Author, Maintainer

Authors (2)

Matthew L. Fidler

Author, Maintainer

Wenping Wang

Author

Contributors (7)

Richard Upton

Contributor

Gabriel Staples

Contributor · added in 2.0.14

Goro Fuji

Contributor · added in 2.0.14

Morwenn

Contributor · added in 2.0.14

Igor Kushnir

Contributor · added in 2.0.14

Kevin Ushey

Contributor · added in 2.0.14

David Cooley

Contributor · added in 2.0.14

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-09-23
the maintainer's request
2.0.19
2024-05-25 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.0.18
2024-01-30 · diff ↗
2.0.17
2023-12-10 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.0.16
2023-03-28 · diff ↗
2.0.15
2023-03-19 · diff ↗
2.0.14
2023-03-17 · diff ↗
2.0.13
2022-11-10 · diff ↗
2.0.12
2022-10-29 · diff ↗
2.0.11
2022-10-09 · diff ↗
2.0.9
2022-10-05 · diff ↗
2.0.10
2022-10-05
R
R 4.2.0 released · 2022-04-22

Package metadata

Total releases: 11
License: GPL (>= 3) OSI
Minimum R: ≥ 4.0.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rxode2parse")

Format

Fidler, M. L., Wang, W., Upton, R., Staples, G., Fuji, G., Morwenn, Kushnir, I., Ushey, K., & Cooley, D. (n.d.). rxode2parse: Parsing and Code Generation Functions for 'rxode2' (Version 2.0.19) [Computer software]. Retrieved August 15, 2026, from https://CRAN.R-project.org/package=rxode2parse

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rxode2parse version 2.0.19 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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