R Observatory: Metrics for rsnps version 0.6.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2023-07-09. Its history is shown below.

Reason: policy violation. On Internet access

Details below reflect version 0.6.0, its last release before removal.

rsnps

0.6.0

Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Julia Gustavsen8 releasesCRAN page ↗GitHub ↗

A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (https://opensnp.org), and 'NBCIs' 'dbSNP' database (https://www.ncbi.nlm.nih.gov/projects/SNP/). Functions are included for searching for 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/rsnps/rsnps_0.6.0.tar.gz"
pkgFile <- "rsnps_0.6.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.6.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ropensci/rsnps")

Development version from ropensci/rsnps. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rsnps

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-rsnps

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 10.87

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Documentation

READMEYes · 364 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 92%
Return-value docs: 65%
References docs: 4%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on59 r2u17 autocran1.6K conda_forge233 bioconda90 c2d4u

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (6)

plyr stringr crul data.table jsonlite httr

LinkingTo (0)

none

Suggests (6)

testthat knitr markdown tibble vcr covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Julia Gustavsen

Author, Maintainer · added in 0.4.0

Authors (5)

Julia Gustavsen

Author, Maintainer · added in 0.4.0

Sina Rüeger

Author · added in 0.4.0

Scott Chamberlain

Author

Kevin Ushey

Author

Hao Zhu

Author · added in 0.2.0

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-07-09
policy violation On Internet access
0.6.0
2023-06-23 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.5.0.0
2022-01-28 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.4.0
2020-08-28 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.3.0
2018-09-20 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.2.0
2016-11-20 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16

Show 5 earlier events

0.1.6
2015-03-03 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.1.0
2014-02-21 · diff ↗
0.0.5
2013-11-13
R
R 3.0.0 released · 2013-04-03

Package metadata

Total releases: 8
License: MIT + file LICENSE OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rsnps")

Format

Gustavsen, J., Rüeger, S., Chamberlain, S., Ushey, K., & Zhu, H. (n.d.). rsnps: Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web (Version 0.6.0) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=rsnps

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rsnps version 0.6.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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