R Observatory: Metrics for riskclustr version 0.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

riskclustr

0.4.1Package record

Functions to Study Etiologic Heterogeneity

0packages depend

2.8Kdownloads / year

93.6%test coverage

13/13flavors OK

Overview

About

Maintained by Emily C. ZaborCRAN page ↗GitHub ↗Website ↗Issues ↗

A collection of functions related to the study of etiologic heterogeneity both across disease subtypes and across individual disease markers. The included functions allow one to quantify the extent of etiologic heterogeneity in the context of a case-control study, and provide p-values to test for etiologic heterogeneity across individual risk factors. Begg CB, Zabor EC, Bernstein JL, Bernstein L, Press MF, Seshan VE (2013) doi:10.1002/sim.5902.

Changes in 0.4.1

Added CITATION file to use JOSS publication as citation. Also added as reference to the README.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("riskclustr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("zabore/riskclustr")

Development version from zabore/riskclustr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-riskclustr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-riskclustr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-riskclustr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.1

READMEYes · 302 wordsVignettesYes · 5 · dynamicNEWSYes · 100% structured · mentions 0.4.1Citation fileYes · cites a publicationWebsiteYes · pkgdown

Cites a JOSS paper

Help pages: 7
Examples that run: 80%4 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 83%
Documented parameters: 100%
Return-value docs: 67%
Help pages citing references: 43%

Vignettes (5)

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #16,293 · ~8/day · ~233/mo

Releases R versions

Daily download trend is not available in this view yet.

28230 days

77790 days

2.8K1 year

Compare downloads with other packages →

Also on67 r2u1.2K conda_forge

How downloads are counted

Repository

zabore/riskclustr ↗Account: zabore

1Stars

1Forks

0Open issues

0Open PRs

4Releases

130Commits

3Commit identities

130 commits · Last activity 2026-10-15

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 119
Median days to close, 50 most recently updated closed PRs: 0

Commits over time

2026-07-19 · 1292026-10-18 · 130

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/zabore/riskclustr on 2026-10-25.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-10-15

pkgdown site last built 2026-10-15

Coverage (1)

Coverage reporting (Codecov)

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 2 practices

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing riskclustr adds 21 packages (12 with compiled code, 22 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, sandwich 1.4 MB.

Depends (1)

R >= 4.0

Imports (3)

mlogit stringrMatrix

LinkingTo (0)

none

Suggests (7)

testthat covr rmarkdown dplyr knitr usethis spelling

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Emily C. Zabor

Author, Maintainer since 0.1.0 (2019)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.4.1Latest
record
2024-01-18 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.4.0
record
2022-03-23 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.3
record
2020-05-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.2
record
2019-09-07 · diff ↗ ·
added 1 export
posthoc_factor_test
R
R 3.6.0 released · 2019-04-26
0.1.0
record
2019-01-18
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-01-18
Total releases: 5 / 7 yrs
License: GPL-2 OSI
Minimum R: ≥ 4.0
Bundled data: 304 KB / 1 file
Download size: 350 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("riskclustr")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.21105/joss.01269.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for riskclustr version 0.4.1 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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