R Observatory: Metrics for refreg version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

refreg

0.1.1

Conditional Multivariate Reference Regions

1packages depend

2.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Oscar Lado-BaleatoFirst published 2021-07-022 releasesCRAN page ↗

An R package for estimating conditional multivariate reference regions. The reference region is non parametrically estimated using a kernel density estimator. Covariates effects on the multivariate response means vector and variance-covariance matrix, thus on the region shape, are estimated by flexible additive predictors. Continuous covariates non linear effects might be estimated using penalized splines smoothers. Confidence intervals for the covariates estimated effects might be derived from bootstrap resampling. Kernel density bandwidth can be estimated with different methods, including a method that optimize the region coverage. Numerical, and graphical, summaries can be obtained by the user in order to evaluate reference region performance with real data. Full mathematical details can be found in doi:10.1002/sim.9163 and doi:10.1007/s00477-020-01901-1.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("refreg", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-refreg

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-refreg

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-refreg

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

16

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 95%
Return-value docs: 100%
References docs: 32%

Downloads

2.9K

CRAN downloads in the past year

Rank #13,540 · ~8/day · ~245/mo

Releases R versions

Daily download trend is not available in this view yet.

18730 days

74990 days

2.9K1 year

Compare downloads with other packages →

Also on93 r2u16 autocran

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (16)

ksKernSmoothmgcvgridExtra ggplot2 RColorBrewer sp stringr foreach doParallel pracma misc3d rgl mbend matrixcalcmethods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

TwoDiRef

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Oscar Lado-Baleato

Maintainer, Author · added in 0.1.1

Authors (4)

Oscar Lado-Baleato

Maintainer, Author · added in 0.1.1

Carmen Cadarso-Suarez

Author, Thesis advisor · added in 0.1.1

Gude Francisco

Author, Thesis advisor

Javier Roca-Pardinas

Author, Contributor · added in 0.1.1

Contributors (1)

Javier Roca-Pardinas

Author, Contributor · added in 0.1.1

Listed in earlier versions (3)

Carmen Cadarso-Suárez

no longer listed · 0.1.0

Óscar Lado-Baleato

no longer listed · 0.1.0

Javier Roca-Pardiñas

no longer listed · 0.1.0

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.1.1Latest
2022-04-18 · current release · diff ↗
0.1.0
2021-07-02
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-07-02
Total releases: 2 / 5 yrs
License: GPL-2 OSI
Minimum R: ≥ 2.10
Bundled data: 113 KB / 3 files
Download size: 138 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("refreg")

Format

Lado-Baleato, O., Cadarso-Suarez, C., Francisco, G., & Roca-Pardinas, J. (2022). refreg: Conditional Multivariate Reference Regions (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.refreg

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for refreg version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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