R Observatory: Metrics for raptr version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

raptr

1.0.1Package record

Representative and Adequate Prioritization Toolkit in R

0packages depend

8.6Kdownloads / year

78.1%test coverage

8/13flavors OK

Overview

About

Maintained by Jeffrey O HansonCRAN page ↗GitHub ↗Website ↗Issues ↗

Biodiversity is in crisis. The overarching aim of conservation is to preserve biodiversity patterns and processes. To this end, protected areas are established to buffer species and preserve biodiversity processes. But resources are limited and so protected areas must be cost-effective. This package contains tools to generate plans for protected areas (prioritizations), using spatially explicit targets for biodiversity patterns and processes. To obtain solutions in a feasible amount of time, this package uses the commercial 'Gurobi' software (obtained from https://www.gurobi.com/). For more information on using this package, see Hanson et al. (2018) doi:10.1111/2041-210X.12862.

Changes in 1.0.1

Fix usage sections in documentation.
Fix missing braces in documentation.
Fix aliasing for package manual entry (#15).

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("raptr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jeffreyhanson/raptr")

Development version from jeffreyhanson/raptr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-raptr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-raptr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-raptr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTER code for possible problemsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Found calls to structure() using deprecated special names:
  raptr/R/RapData.R (.Names: 2, .Dim: 1, .Dimnames: 1)
  raptr/R/RapSolved.R (.Dim: 1, .Dimnames: 1)
  raptr/R/raptr-internal.R (.Names: 1)
  raptr/tests/testthat/test-01-rapr-internal-test.R (.Names: 1)
'.Names' should be changed to 'names'.
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘summary.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 12.2 min · r-oldrel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTE2026-08-12
ERROR8 OK, 4 NOTE, 1 ERROR2026-08-10
NOTE12 OK, 1 NOTE2026-07-11
OK13 OK2026-06-21
ERROR12 OK, 1 ERROR2026-06-20

Show 9 earlier changesHide 9 earlier changes

OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02
ERROR11 OK, 1 ERROR2026-04-25
NOTE11 OK, 3 NOTE2026-04-22
ERROR10 OK, 3 NOTE, 1 ERROR2026-04-18
NOTE11 OK, 3 NOTE2026-04-10
ERROR10 OK, 3 NOTE, 1 ERROR2026-04-09
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.1

READMEYes · 364 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.0.1Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 72 (5 internal)includes a package overview page
Examples that run: 0%47 never run
Exported functions with examples: 91%
Documented parameters: 97%
Return-value docs: 88%
Help pages citing references: 1%

Vignettes (1)

raptr: Representative and Adequate Prioritization Toolkit in R

How these are measured

Downloads

8.6K

CRAN downloads in the past year

Rank #5,638 · ~24/day · ~716/mo

Releases R versions

Daily download trend is not available in this view yet.

51030 days

1.4K90 days

8.6K1 year

Compare downloads with other packages →

Also on383 r2u7 autocran

How downloads are counted

Repository

jeffreyhanson/raptr ↗Account: jeffreyhanson

8Stars

0Forks

0Open issues

0Open PRs

4Releases

450Commits

3Commit identities

450 commits · Last activity 2024-01-27

Responsiveness

How these are sampled

PRs merged (all time): 60%
Median days to close, 50 most recently updated closed issues: 1
Median days to close, 50 most recently updated closed PRs: 59

Stars over time

2024-11-20 · 82026-07-07 · 8

How these are measured

PracticesBeta

8 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/jeffreyhanson/raptr on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2024-01-27

pkgdown site last built 2024-01-26, before release 1.0.1 (2024-01-28)

Coverage (1)

Coverage reporting

Reproducibility and dev environment (1)

Makefile

Show all practicesHide 1 practice

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Installing raptr adds 108 packages (63 with compiled code, 114 MB of source tarballs). Heaviest: BH 14 MB, stringi 11 MB, sf 9.3 MB.

Depends (3)

R >= 4.0.0sf terra

Imports (19)

utilsmethodsstatsgraphicsgrDevicesspMatrixassertthatbootPBSmapping scales shape adehabitatHR RColorBrewer ggplot2 (>= 3.4.0)hypervolume ks mvtnorm (>= 1.1.3)withr

LinkingTo (3)

Rcpp RcppEigen BH

Suggests (10)

knitr roxygen2 rmarkdown testthat RgoogleMaps (>= 1.4.5.3)dplyr vegan gurobi (>= 8.0.0)gridExtra rgl

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Jeffrey O Hanson

Author, Maintainer since 0.0.1 (2016)

Richard A Fuller

Author

Hugh P Possingham

Author

Jonathan R Rhodes

Author

Listed in earlier versions (5)

Show 5 peopleHide 5 people

Richard A

no longer listed · 0.0.1 to 1.0.1

Jeffrey O

no longer listed · 0.0.1 to 1.0.1

Hugh P

no longer listed · 0.0.1 to 1.0.1

Jonathon R

no longer listed · 0.0.1

Jonathan R

no longer listed · 0.0.3 to 1.0.1

Releases (13)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.1Latest
record
2024-01-28 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.0
record
2023-03-14 · diff ↗ ·
added 1 export
convert2PolySet
unarchivedReturned to CRAN
2022-07-25
0.2.1
record
2022-07-25 · diff ↗
archivedRemoved from CRAN
2022-05-04
requires archived package 'RandomFields'
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.1.7
record
2020-07-31 · diff ↗ ·
removed 2 exports
is.gdalInstalled, rasterizeGDAL
R
R 4.0.0 released · 2020-04-24
0.1.6
record
2020-03-11 · diff ↗
0.1.5
record
2020-02-12 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 10 earlier eventsHide 10 earlier events

0.1.4
record
2019-04-11 · diff ↗
0.1.3
record
2018-11-26 · diff ↗
0.1.2
record
2018-06-28 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.1
record
2017-11-20 · diff ↗ ·
removed 1 export
update

added 1 export
solve
0.0.5
record
2017-08-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.0.3
record
2016-11-25 · diff ↗
0.0.1
record
2016-10-28
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-10-28
Total releases: 13 / 10 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Bundled data: 11 KB / 2 files
Download size: 4.4 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("raptr")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1111/2041-210x.12862.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for raptr version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →