R Observatory: Metrics for rNeighborQTL version 1.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

rNeighborQTL

1.1.2

Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects

0packages depend

8.3Kdownloads / year

77.2%test coverage

0/13checks pass

Overview

About

Maintained by Yasuhiro SatoFirst published 2020-06-044 releasesCRAN page ↗

To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker regression to interval mapping. The theoretical background of the method is described in Sato et al. (2021) doi:10.1093/g3journal/jkab017.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("rNeighborQTL", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rneighborqtl

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-rNeighborQTL

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 3.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.78

77.2%

Coverage · measured lines

100%

Documentation · exports

4

Dependencies · direct

Check history

NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 89%
Return-value docs: 88%
References docs: 24%

Downloads

8.3K

CRAN downloads in the past year

Rank #5,685 · ~23/day · ~695/mo

Releases R versions

Daily download trend is not available in this view yet.

19930 days

1.4K90 days

8.3K1 year

Compare downloads with other packages →

Also on101 r2u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

gastonMatrixqtlparallel

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Yasuhiro Sato

Author, Maintainer

Authors (3)

Yasuhiro Sato

Author, Maintainer

Atsushi J. Nagano

Author

Kazuya Takeda

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.2Latest
2021-04-09 · current release · diff ↗
1.1.1
2020-11-12 · diff ↗
1.1.0
2020-07-28 · diff ↗
1.0.0
2020-06-04
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-06-04
Total releases: 4 / 6 yrs
License: GPL-3 OSI
Download size: 246 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rNeighborQTL")

Format

Sato, Y., Nagano, A. J., & Takeda, K. (2021). rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects (Version 1.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.rNeighborQTL

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rNeighborQTL version 1.1.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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