rMVP
Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool
Description
A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can (1) effectively process large data, (2) rapidly evaluate population structure, (3) efficiently estimate variance components several algorithms, (4) implement parallel-accelerated association tests of markers three methods, (5) globally efficient design on GWAS process computing, (6) enhance visualization of related information. 'rMVP' contains three models GLM (Alkes Price (2006) <DOI:10.1038/ng1847>), MLM (Jianming Yu (2006) <DOI:10.1038/ng1702>) and FarmCPU (Xiaolei Liu (2016) <doi:10.1371/journal.pgen.1005767>); variance components estimation methods EMMAX (Hyunmin Kang (2008) <DOI:10.1534/genetics.107.080101>;), FaSTLMM (method: Christoph Lippert (2011) <DOI:10.1038/nmeth.1681>, R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) <DOI:10.1371/journal.pone.0107684> and 'SUPER': Qishan Wang and Feng Tian (2014) <DOI:10.1371/journal.pone.0107684>), and HE regression (Xiang Zhou (2017) <DOI:10.1214/17-AOAS1052>).
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
PDF version of manual
Rd conversion errors: Converting parsed Rd's to LaTeX .Warning in file(out, "wt") : cannot open file '/tmp/RtmpEAlgHz/ltx10c80c5727f475/MVP.GLM.tex': No space left on device Error in file(out, "wt") : cannot open the connection
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 31.3Mb
sub-directories of 1Mb or more:
libs 30.0Mb
installed package size
installed size is 32.7Mb
sub-directories of 1Mb or more:
libs 31.5Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/rMVP.Rcheck/00install.out' for details.
installed package size
installed size is 31.3Mb
sub-directories of 1Mb or more:
libs 30.0Mb
installed package size
installed size is 32.7Mb
sub-directories of 1Mb or more:
libs 31.5Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
installed package size
installed size is 31.3Mb
sub-directories of 1Mb or more:
libs 30.0Mb
installed package size
installed size is 32.7Mb
sub-directories of 1Mb or more:
libs 31.5Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
whether package can be installed
Installation failed. See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rMVP.Rcheck/00install.out’ for details.
installed package size
installed size is 31.3Mb
sub-directories of 1Mb or more:
libs 30.0Mb
installed package size
installed size is 32.7Mb
sub-directories of 1Mb or more:
libs 31.5Mb
NOTE 4 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 14, 2026
installed package size
installed size is 31.3Mb
sub-directories of 1Mb or more:
libs 30.0Mb
installed package size
installed size is 32.7Mb
sub-directories of 1Mb or more:
libs 31.5Mb