R Observatory: Metrics for qvirus version 0.0.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

qvirus

0.0.6Package record

Quantum Computing for Analyzing CD4 Lymphocytes and Antiretroviral Therapy

0packages depend

3.6Kdownloads / year

95.2%test coverage

13/13flavors OK

Overview

About

Maintained by Juan Pablo Acuña GonzálezCRAN page ↗

Resources, tutorials, and code snippets dedicated to exploring the intersection of quantum computing and artificial intelligence (AI) in the context of analyzing Cluster of Differentiation 4 (CD4) lymphocytes and optimizing antiretroviral therapy (ART) for human immunodeficiency virus (HIV). With the emergence of quantum artificial intelligence and the development of small-scale quantum computers, there's an unprecedented opportunity to revolutionize the understanding of HIV dynamics and treatment strategies. This project leverages a quantum computer simulator, to explore these applications in quantum computing techniques, addressing the challenges in studying CD4 lymphocytes and enhancing ART efficacy.

Changes in 0.0.6

New features

Data and Quantum Encoding

Added curated datasets that support reproducible workflows for quantum state preparation

and Hamiltonian construction in immunometabolic modeling:

data_enc: biomarker panel for 3-qubit angle encoding.
data_corr: biomarker pool for Hamiltonian correlation structure.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("qvirus", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qvirus

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-qvirus

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-qvirus

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.4 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.0.6

READMEYes · 65 wordsVignettesNoNEWSYes · 100% structured · mentions 0.0.6Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 25
Examples that run: 95%20 run in a plain check · 1 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 71%
Help pages citing references: 20%

How these are measured

Downloads

3.6K

CRAN downloads in the past year

Rank #13,755 · ~10/day · ~299/mo

Releases R versions

Daily download trend is not available in this view yet.

30030 days

86090 days

3.6K1 year

Compare downloads with other packages →

Also on87 r2u2 autocran

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing qvirus adds 15 packages (9 with compiled code, 5.2 MB of source tarballs). Heaviest: vctrs 1.0 MB, dplyr 902 KB, rlang 766 KB.

Depends (1)

R >= 3.5

Imports (3)

dplyr magrittrstats

LinkingTo (0)

none

Suggests (2)

rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Juan Pablo Acuña González

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.0.6Latest
record
2026-04-15 · current release · diff ↗
0.0.5
record
2025-11-09 · diff ↗ ·
added 2 exports
run_bb84_simulation, run_e91_simulation
0.0.4
record
2025-05-21 · diff ↗ ·
removed 8 exports
complex_check, conjugate_transpose, create_interactions, normalize_check, pure_qubit1, pure_qubit2, simulate_entanglement, six_state

added 6 exports
cd_diff, cds_diff, summary, vl_diff, vlog_diff, vlogs_diff
R
R 4.5.0 released · 2025-04-11
0.0.3
record
2024-10-26 · diff ↗ ·
added 6 exports
InteractionClassification, create_interactions, estimate_payoffs, mse, nearest_payoff, payoffs_list
0.0.2
record
2024-08-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-08-26
Total releases: 5 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5
Bundled data: 17 KB / 7 files
Download size: 64 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("qvirus")

Format

Acuña González, J. P. (2026). qvirus: Quantum Computing for Analyzing CD4 Lymphocytes and Antiretroviral Therapy (Version 0.0.6) [Computer software]. https://doi.org/10.32614/CRAN.package.qvirus

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for qvirus version 0.0.6 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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