R Observatory: Metrics for quincunx version 0.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

quincunx

0.2.0Package record

REST API Client for the 'PGS' Catalog

0packages depend

1.9Kdownloads / year

0.7%test coverage

13/13flavors OK

Overview

About

Maintained by Ramiro MagnoCRAN page ↗GitHub ↗Website ↗Issues ↗Declared funders: Acuity Analytics, Pattern Institute and 1 more

Programmatic access to the 'PGS' Catalog. This package provides easy access to 'PGS' Catalog data by accessing the REST API https://www.pgscatalog.org/rest/.

Changes in 0.2.0

Resubmission after archival due to <https://github.com/colearendt/tidyjson/pull/152>.
Maintainer affiliation changed to include Acuity Analytics.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("quincunx", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ascentsoftware/quincunx")

Development version from ascentsoftware/quincunx. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-quincunx

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-quincunx

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-quincunx

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK11 OK2026-06-09
ERROR10 OK, 1 ERROR2026-06-07
OK8 OK2026-06-06

Show 1 earlier changeHide 1 earlier change

ERROR3 OK, 1 ERROR2026-06-05

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.0

READMEYes · 280 wordsVignettes· In the repository, left out of the releaseNEWSYes · 100% structured · mentions 0.2.0Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 84 (42 internal)
Examples that run: 49%20 run in a plain check (15 of them under a condition) · 21 never run
Exported functions with examples: 97%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

1.9K

CRAN downloads in the past year

Rank #8,545 · ~5/day · ~162/mo

Releases R versions

Daily download trend is not available in this view yet.

40630 days

1.1K90 days

1.9K1 year

Compare downloads with other packages →

Also on69 r2u4 autocran

How downloads are counted

Repository

ascentsoftware/quincunx ↗Organization: AscentSoftware

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-04

Responsiveness

not measured

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ascentsoftware/quincunx on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (1)

Code of conduct

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-06-04 · The repository has a site deploy workflow

pkgdown site last built 2026-06-04, before release 0.2.0 (2026-06-05)

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 2 practices

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Installing quincunx adds 48 packages (29 with compiled code, 26 MB of source tarballs). Heaviest: stringi 11 MB, tidyjson 1.8 MB, openssl 1.1 MB.

Depends (1)

R >= 4.1.0

Imports (18)

stringr vroom purrr glue dplyr tidyjson tibble lubridate rlang tidyr httrutilsrvest progressmethodswritexl memoise readr

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown ggplot2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (6)

Ramiro Magno

Author, Maintainer since 0.1.1 (2021)

Isabel Duarte

Author

Ana-Teresa Maia

Author

Acuity Analytics

Copyright holder, Funder · added in 0.2.0

https://www.acuityanalytics.com/

Pattern Institute

Copyright holder, Funder · added in 0.1.7

Rise Health

Copyright holder, Funder · added in 0.2.0

Listed in earlier versions (1)

CINTESIS

no longer listed · 0.1.1 to 0.1.10

Releases (8)

Pick two releases to compare their code metrics.

unarchivedReturned to CRAN
2026-06-05
0.2.0Latest
record
2026-06-05 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-13
issues were not corrected despite reminders
0.1.10
record
2025-05-31 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.9
record
2025-03-20 · diff ↗ ·
removed 1 export
%>%
R
R 4.4.0 released · 2024-04-24
0.1.7
record
2023-07-04 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.5
record
2022-08-14 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.4
record
2021-10-30 · diff ↗
0.1.2
record
2021-10-29 · diff ↗
0.1.1
record
2021-10-08
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-10-08
Total releases: 8 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 2.8 KB / 2 files
Download size: 1.0 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("quincunx")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/btab522.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for quincunx version 0.2.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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