R Observatory: Metrics for quincunx version 0.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

quincunx

0.2.0

REST API Client for the 'PGS' Catalog

0packages depend

1.2Kdownloads / year

0.7%test coverage

13/13checks pass

Overview

About

Maintained by Ramiro MagnoFirst published 2026-06-058 releasesCRAN page ↗GitHub ↗

Programmatic access to the 'PGS' Catalog. This package provides easy access to 'PGS' Catalog data by accessing the REST API https://www.pgscatalog.org/rest/.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("quincunx", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ascentsoftware/quincunx")

Development version from ascentsoftware/quincunx. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-quincunx

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-quincunx

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-quincunx

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.01

0.7%

Coverage · measured lines

100%

Documentation · exports

18

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
11 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
10 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-06
8 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 1 earlier snapshots

ERROR2026-06-05
3 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 280 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 49%
Documented parameters: 97%
Return-value docs: 100%
References docs: 0%

Downloads

1.2K

CRAN downloads in the past year

Rank #9,672 · ~3/day · ~97/mo

Releases R versions

Daily download trend is not available in this view yet.

23330 days

97590 days

1.2K1 year

Compare downloads with other packages →

Also on109 r2u29 autocran

Repository

GitHub ↗ ascentsoftware/quincunx

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-04

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/ascentsoftware/quincunx on 2026-08-23.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (18)

stringr vroom purrr glue dplyr tidyjson tibble lubridate rlang tidyr httrutilsrvest progressmethodswritexl memoise readr

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown ggplot2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Ramiro Magno

Author, Maintainer

Authors (3)

Ramiro Magno

Author, Maintainer

Isabel Duarte

Author

Ana-Teresa Maia

Author

Copyright holders (3)

Acuity Analytics

Copyright holder, Funder · added in 0.2.0

Pattern Institute

Copyright holder, Funder · added in 0.1.7

Rise Health

Copyright holder, Funder · added in 0.2.0

Funders (3)

Acuity Analytics

Copyright holder, Funder · added in 0.2.0

Pattern Institute

Copyright holder, Funder · added in 0.1.7

Rise Health

Copyright holder, Funder · added in 0.2.0

Listed in earlier versions (1)

CINTESIS

no longer listed · 0.1.1 to 0.1.10

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

0.2.0Latest
2026-06-05 · current release · diff ↗
unarchivedReturned to CRAN
2026-06-05
R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-13
issues were not corrected despite reminders
0.1.10
2025-05-31 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.9
2025-03-20 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.7
2023-07-04 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.5
2022-08-14 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.4
2021-10-30 · diff ↗
0.1.2
2021-10-29 · diff ↗
0.1.1
2021-10-08
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2026-06-05
Total releases: 8 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 2.8 KB / 2 files
Download size: 1.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("quincunx")

Format

Magno, R., Acuity Analytics, Pattern Institute, Rise Health, Duarte, I., & Maia, A. (2026). quincunx: REST API Client for the 'PGS' Catalog (Version 0.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.quincunx

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for quincunx version 0.2.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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