R Observatory: Metrics for queryup version 1.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

queryup

1.0.5Package record

Query the 'UniProtKB' REST API

0packages depend

2.9Kdownloads / year

89.9%test coverage

13/13flavors OK

Overview

About

Maintained by Guillaume VoisinneCRAN page ↗GitHub ↗Issues ↗

Retrieve protein information from the 'UniProtKB' REST API (see https://www.uniprot.org/help/api_queries).

Changes in 1.0.5

Handling of possible errors when using httr::http_type() for long queries

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("queryup", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("VoisinneG/queryup")

Development version from VoisinneG/queryup. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-queryup

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-queryup

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-queryup

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 15.7 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.5

READMEYes · 995 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.0.5Citation fileYes · software entry onlyWebsitenot declared in DESCRIPTION

Help pages: 8
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Introduction to queryup HTML

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #18,219 · ~8/day · ~241/mo

Releases R versions

Daily download trend is not available in this view yet.

28630 days

71190 days

2.9K1 year

Compare downloads with other packages →

Also on76 r2u5 autocran171 conda_forge

How downloads are counted

Repository

voisinneg/queryup ↗Account: VoisinneG

4Stars

1Forks

1Open issues

0Open PRs

4Releases

73Commits

1Commit identities

proteomicsrest-apiuniprotr

License file reads as GPL-3.0 · 73 commits · Last activity 2023-06-06

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 222
Median days to close, 50 most recently updated closed PRs: not measured

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/voisinneg/queryup on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Coverage (1)

Coverage reporting

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing queryup adds 8 packages (6 with compiled code, 3.0 MB of source tarballs). Heaviest: openssl 1.1 MB, jsonlite 1.0 MB, curl 714 KB.

Depends (1)

R >= 2.10

Imports (3)

httr jsonliteutils

LinkingTo (0)

none

Suggests (5)

covr knitr xml2 rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Guillaume Voisinne

Author, Maintainer since 1.0.0 (2022)

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.5Latest
record
2023-06-05 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2023-04-04
archivedRemoved from CRAN
2023-04-04
repeated policy violation On Internet access, even after update
1.0.4
record
2023-04-04 · diff ↗
1.0.3
record
2023-03-27 · diff ↗
1.0.2
record
2023-02-10 · diff ↗
1.0.1
record
2022-11-10 · diff ↗
1.0.0
record
2022-09-12
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-09-12
Total releases: 6 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 22 KB / 3 files
Download size: 47 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("queryup")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for queryup version 1.0.5 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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