R Observatory: Metrics for qtlnet version 1.5.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

qtlnet

1.5.4

Causal Inference of QTL Networks

1packages depend

3Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Brian S. YandellFirst published 2012-06-087 releasesCRAN page ↗

Functions to Simultaneously Infer Causal Graphs and Genetic Architecture. Includes acyclic and cyclic graphs for data from an experimental cross with a modest number (<10) of phenotypes driven by a few genetic loci (QTL). Chaibub Neto E, Keller MP, Attie AD, Yandell BS (2010) Causal Graphical Models in Systems Genetics: a unified framework for joint inference of causal network and genetic architecture for correlated phenotypes. Annals of Applied Statistics 4: 320-339. doi:10.1214/09-AOAS288.

Install

R (CRAN)Ubuntu (r2u)

install.packages("qtlnet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qtlnet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 60%
Documented parameters: 91%
Return-value docs: 79%
References docs: 85%

Downloads

3K

CRAN downloads in the past year

Rank #10,465 · ~8/day · ~250/mo

Releases R versions

Daily download trend is not available in this view yet.

28430 days

92590 days

3K1 year

Compare downloads with other packages →

Also on207 r2u52 c2d4u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (6)

R >= 2.10qtl igraph sem graph pcalg

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

BayesNetBP

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (2)

Elias Chaibub Neto

no longer listed · 1.2.4 to 1.5.4

Brian S. yandell

no longer listed · 1.2.4 to 1.5.4

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.5.4Latest
2020-04-13 · current release · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.4.4
2018-04-05 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.3.6
2014-03-14 · diff ↗

Show 6 earlier events

1.3.5
2013-09-16 · diff ↗
1.3.3
2013-07-03 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.2.5
2012-06-25 · diff ↗
1.2.4
2012-06-08
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-06-08
Total releases: 7 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 2.8 MB / 9 files
Download size: 3.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Causal Inference

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("qtlnet")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for qtlnet version 1.5.4 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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