R Observatory: Metrics for qPRAentry version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

qPRAentry

0.1.1Package record

Quantitative Pest Risk Assessment at the Entry Step

0packages depend

6Kdownloads / year

16.7%test coverage

13/13flavors OK

Overview

About

Maintained by Martina CendoyaCRAN page ↗GitHub ↗Issues ↗

Supports risk assessors in performing the entry step of the quantitative Pest Risk Assessment. It allows the estimation of the amount of a plant pest entering a risk assessment area (in terms of founder populations) through the calculation of the imported commodities that could be potential pathways of pest entry, and the development of a pathway model. Two 'Shiny' apps based on the functionalities of the package are included, that simplify the process of assessing the risk of entry of plant pests. The approach is based on the work of the European Food Safety Authority (EFSA PLH Panel et al., 2018) doi:10.2903/j.efsa.2018.5350.

Changes in 0.1.1

Added an error message when the population data download from Eurostat fails.
Added link to GitHub.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("qPRAentry", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mcendoya/qPRAentry")

Development version from mcendoya/qPRAentry. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qpraentry

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-qPRAentry

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-qPRAentry

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
WARNING12 OK, 1 WARNING2026-06-07

Show 3 earlier changesHide 3 earlier changes

OK13 OK2026-04-30
ERROR13 OK, 1 ERROR2026-04-22
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMEYes · 182 wordsVignettesYes · 1 · dynamicNEWSYes · 67% structured · mentions 0.1.1Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 13 (1 internal)includes a package overview page
Examples that run: 100%10 run in a plain check (2 of them under a condition)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

qPRAentry workflow

How these are measured

Downloads

6K

CRAN downloads in the past year

Rank #10,113 · ~16/day · ~498/mo

Releases R versions

Daily download trend is not available in this view yet.

35430 days

1K90 days

6K1 year

Compare downloads with other packages →

Also on102 r2u11 autocran

How downloads are counted

Repository

mcendoya/qpraentry ↗Account: mcendoya

1Stars

0Forks

0Open issues

0Open PRs

0Releases

140Commits

2Commit identities

License file reads as GPL-3.0 · 140 commits · Last activity 2025-09-23 · The default branch showed an older version (0.1.0) than CRAN on 2026-10-18

Responsiveness

not measured

Stars over time

2026-07-07 · 02026-09-24 · 1

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/mcendoya/qpraentry on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing qPRAentry adds 114 packages (57 with compiled code, 102 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (1)

R >= 2.10

Imports (16)

bsplus dplyr DT eurostat ggiraph ggplot2 giscoR memoise purrr sf shiny shinycssloaders shinyjs shinyWidgetsstatstidyr

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Martina Cendoya

Author, Maintainer since 0.1.0 (2024)

Maria Chiara Rosace

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
record
2025-04-09 · current release · diff ↗
0.1.0
record
2024-12-17
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-12-17
Total releases: 2 / 2 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 11 KB / 2 files
Download size: 374 KB

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("qPRAentry")

Format

Cendoya, M., & Rosace, M. C. (2025). qPRAentry: Quantitative Pest Risk Assessment at the Entry Step (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.qPRAentry

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for qPRAentry version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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