R Observatory: Metrics for qPCRtools version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

qPCRtools

1.0.1Package record

Tools for qPCR

0packages depend

2.8Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Xiang LICRAN page ↗GitHub ↗Issues ↗

PKG_DESC.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("qPCRtools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lixiang117423/qPCRtools")

Development version from lixiang117423/qPCRtools. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qpcrtools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-qPCRtools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-qPCRtools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘CalCurve.Rd’ ‘CalExp2dCt.Rd’ ‘CalExp2ddCt.Rd’ ‘CalExpCurve.Rd’
  ‘CalExpRqPCR.Rd’ ‘CalRTable.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 2.7 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 1 NOTE2026-07-11
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-10
WARNING12 OK, 1 WARNING2026-05-09

Show 1 earlier changeHide 1 earlier change

OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 6
Examples that run: 100%6 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #19,006 · ~8/day · ~233/mo

Releases R versions

Daily download trend is not available in this view yet.

24130 days

68490 days

2.8K1 year

Compare downloads with other packages →

Also on69 r2u3 autocran

How downloads are counted

Repository

lixiang117423/qpcrtools ↗Account: lixiang117423

18Stars

5Forks

5Open issues

0Open PRs

0Releases

48Commits

1Commit identities

48 commits · Last activity 2026-06-10 · 0% stars, 30d · Default branch at 2.0.0, ahead of CRAN 1.0.1 (checked 2026-10-18)

Responsiveness

not measured

Stars over time

2024-11-19 · 182026-07-07 · 18

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/lixiang117423/qpcrtools on 2026-10-18.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen 2026-06-10
Named in .Rbuildignore: .claude
Commits: at least 3 crediting it in the message

Models named in its commits

Claude Opus 4.73 commits · Jun 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing qPCRtools adds 106 packages (56 with compiled code, 100 MB of source tarballs). Heaviest: stringi 11 MB, TH.data 8.2 MB, ggplot2 6.0 MB.

Depends (0)

none

Imports (12)

broom dplyr ggplot2 ggpmisc ggthemes kableExtra magrittr multcomp rstatixstatstibble tidyr

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Xiang LI

Maintainer since 0.1.1 (2022), Author

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.1Latest
record
2023-11-02 · current release · diff ↗ ·
added 1 export
CalExp2dCt
R
R 4.3.0 released · 2023-04-21
0.2.1
record
2022-08-15 · diff ↗
0.2.0
record
2022-08-07 · diff ↗
0.1.1
record
2022-07-03
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-07-03
Total releases: 4 / 4 yrs
License: MIT + file LICENSE OSI
Download size: 18 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("qPCRtools")

Format

LI, X. (2023). qPCRtools: Tools for qPCR (Version 1.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.qPCRtools

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for qPCRtools version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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