R Observatory: Metrics for pvLRT version 0.5.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pvLRT

0.5.1Package record

Likelihood Ratio Test-Based Approaches to Pharmacovigilance

0packages depend

3Kdownloads / year

–test coverage

0/13flavors OK

Overview

About

Maintained by Saptarshi ChakrabortyCRAN page ↗GitHub ↗Issues ↗

A suite of likelihood ratio test based methods to use in pharmacovigilance. Contains various testing and post-processing functions.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pvLRT", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("c7rishi/pvLRT")

Development version from c7rishi/pvLRT. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pvlrt

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pvLRT

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pvLRT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) pvlrt.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
checkRd: (-1) r_contin_table_zip.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^

CRAN check page ↗

Slowest check: 2.9 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTENow
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.5.1

README· In the repository, left out of the releaseVignettesNoNEWS· In the repository, left out of the releaseCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 25 (1 internal)includes a package overview page
Examples that run: 100%13 run in a plain check
Exported functions with examples: 89%
Documented parameters: 82%
Return-value docs: 88%
Help pages citing references: 4%

How these are measured

Downloads

3K

CRAN downloads in the past year

Rank #18,881 · ~8/day · ~247/mo

Releases R versions

Daily download trend is not available in this view yet.

28030 days

68690 days

3K1 year

Compare downloads with other packages →

Also on95 r2u5 autocran

How downloads are counted

Repository

c7rishi/pvlrt ↗Account: c7rishi

1Stars

0Forks

0Open issues

0Open PRs

0Releases

74Commits

1Commit identities

74 commits · Last activity 2023-03-07

Responsiveness

not measured

Stars over time

2023-03-25 · 12026-07-07 · 1

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/c7rishi/pvlrt on 2026-10-11.

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing pvLRT adds 40 packages (20 with compiled code, 36 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 3.6.0

Imports (11)

statsmethodsutilsmagrittr progress data.table bit64 glue RColorBrewer ggplot2 ggfittext

LinkingTo (0)

none

Suggests (3)

furrr plotly patchwork

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Saptarshi Chakraborty

Author, Maintainer since 0.3 (2021)

Marianthi Markatou

Author

Anran Liu

Contributor

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.5.1Latest
record
2023-03-07 · current release · diff ↗
0.5
record
2023-01-21 · diff ↗ ·
added 1 export
convert_raw_to_contin_table
R
R 4.2.0 released · 2022-04-22
0.4
record
2022-02-25 · diff ↗ ·
added 1 export
extract_run_time
0.3
record
2021-11-23
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-11-23
Total releases: 4 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.6.0
Bundled data: 1.5 MB / 9 files
Download size: 1.5 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pvLRT")

Format

Chakraborty, S., Liu, A., & Markatou, M. (2023). pvLRT: Likelihood Ratio Test-Based Approaches to Pharmacovigilance (Version 0.5.1) [Computer software]. https://doi.org/10.32614/CRAN.package.pvLRT

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pvLRT version 0.5.1 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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