R Observatory: Metrics for pvEBayes version 0.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pvEBayes

0.3.0

Empirical Bayes Methods for Pharmacovigilance

0packages depend

6.7Kdownloads / year

91.9%test coverage

13/13checks pass

Overview

About

Maintained by Yihao TanFirst published 2025-07-106 releasesCRAN page ↗GitHub ↗

A suite of empirical Bayes methods to use in pharmacovigilance. Contains various model fitting and post-processing functions. For more details see Tan et al. (2025) doi:10.1002/sim.70195, doi:10.48550/arXiv.2512.01057; Koenker and Mizera (2014) doi:10.1080/01621459.2013.869224; Efron (2016) doi:10.1093/biomet/asv068.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pvEBayes", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ropensci/pvEBayes")

Development version from ropensci/pvEBayes. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pvebayes

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pvEBayes

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pvEBayes

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.0 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.17

91.9%

Coverage · measured lines

91%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 2 earlier snapshots

NOTE2026-03-19
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
4 OK · 2 NOTE · 0 WARNING · 8 ERROR · 0 FAILURE

Documentation

READMEYes · 723 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 42%

Downloads

6.7K

CRAN downloads in the past year

Rank #7,621 · ~18/day · ~558/mo

Releases R versions

Daily download trend is not available in this view yet.

19530 days

1.1K90 days

6.7K1 year

Compare downloads with other packages →

Also on425 r2u17 autocran

Repository

GitHub ↗ ropensci/pvebayes

0Stars

1Forks

1Open issues

0Open PRs

0Releases

73Commits

2Contributors

pharmacovigilance

License GPL-3.0 · 73 commits · Last activity 2026-06-18

Forks over time

2025-12-12 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/ropensci/pvebayes on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Research and citation (1)

codemeta.json

Lint, format, editor (2)

lintrRStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6.0

Imports (14)

data.table ggdist ggfittext ggplot2 gluegraphicsmagrittrmethodsstatswacolors RcppsplinesCVXR cli

LinkingTo (2)

Rcpp RcppEigen

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Yihao Tan

Author, Maintainer

Authors (4)

Yihao Tan

Author, Maintainer

Saptarshi Chakraborty

Author

Marianthi Markatou

Author

Raktim Mukhopadhyay

Author

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

0.3.0Latest
2026-06-16 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.2.2
2026-03-13 · diff ↗
0.2.1
2026-01-12 · diff ↗
0.2.0
2025-12-15 · diff ↗
0.1.2
2025-10-01 · diff ↗
0.1.1
2025-07-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-07-10
Total releases: 6 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.6.0
Bundled data: 86 KB / 7 files
Download size: 261 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pvEBayes")

Format

Tan, Y., Chakraborty, S., Markatou, M., & Mukhopadhyay, R. (2026). pvEBayes: Empirical Bayes Methods for Pharmacovigilance (Version 0.3.0) [Computer software]. https://doi.org/10.32614/CRAN.package.pvEBayes

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pvEBayes version 0.3.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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