R Observatory: Metrics for ptmixed version 1.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ptmixed

1.1.3Package record

Poisson-Tweedie Generalized Linear Mixed Model

0packages dependsuggested by 1

3.3Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Mirko SignorelliCRAN page ↗Website ↗

Fits the Poisson-Tweedie generalized linear mixed model described in Signorelli et al. (2021, doi:10.1177/1471082X20936017). Likelihood approximation based on adaptive Gauss Hermite quadrature rule.

Changes in 1.1.3

Released: August 2022
Updated vignette with package logo and more detailed installation instructions
Added xlim argument to make.spaghetti()
Changed xlab default in pmf()

ptmixed 1.1.2

Released: April 2022
Removed dependency on aod package (which is scheduled to be archived by CRAN)

ptmixed 1.1.1

Released: December 2021
Fixed problem with NEWS file, which was not visible on CRAN any more

Show all changes in 1.1.3Hide the rest of the changes in 1.1.3

ptmixed 1.1.0

Released: November 2021
Updated citation information with details of final (issued) version of the article published in *Statistical Modelling* in: package description, citation file, help pages and vignettes
Fixed bug in make.spaghetti() function (rows with NAs on either x or y do not cause problems any more)

From inst/NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)

install.packages("ptmixed", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ptmixed

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Mirko Signorelli <msignorelli.rpackages@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

CRAN check page ↗

Slowest check: 5.9 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.3

READMENoVignettesYes · 1 · dynamicNEWSYes · 67% structured · mentions 1.1.3Citation fileYes · cites a publicationWebsiteYes

Help pages: 13
Examples that run: 67%6 run in a plain check · 3 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 90%
Documented parameters: 100%
Return-value docs: 80%
Help pages citing references: 92%

Vignettes (1)

An introduction to the R package ptmixed

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #12,080 · ~9/day · ~272/mo

Releases R versions

Daily download trend is not available in this view yet.

36330 days

90590 days

3.3K1 year

Compare downloads with other packages →

Also on77 r2u

How downloads are counted

Repository

mirkosignorelli/r ↗

Responsiveness

not measured

How these are measured

PracticesBeta

Repository github.com/mirkosignorelli/r is linked, but repository-practices checks have not run for it yet.

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing ptmixed adds 14 packages (8 with compiled code, 13 MB of source tarballs). Heaviest: lme4 4.1 MB, nloptr 2.1 MB, Rcpp 1.8 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 3.5.0

Imports (8)

graphicsGLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq

LinkingTo (0)

none

Suggests (2)

rmarkdown knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

pencal

How these are counted

Code & Tests

Datasets

People & History

People (3)

Mirko Signorelli

Pietro Spitali

Contributor

Roula Tsonaka

Contributor

Releases (21)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.3Latest
record
2022-08-18 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
1.1.2
record
2022-04-01 · diff ↗
1.1.1
record
2021-12-01 · diff ↗
1.1.0
record
2021-11-05 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.3
record
2021-03-02 · diff ↗
1.0.2
record
2021-01-07 · diff ↗
1.0.1
record
2020-10-26 · diff ↗
1.0.0
record
2020-08-27 · diff ↗
0.5.4
record
2020-06-13 · diff ↗
R
R 4.0.0 released · 2020-04-24

Show 14 earlier eventsHide 14 earlier events

0.5.2
record
2020-04-17 · diff ↗
0.5.1
record
2020-04-09 · diff ↗ ·
added 2 exports
pmf, simulate_ptglmm
0.4.3
record
2020-02-19 · diff ↗ ·
added 1 export
make.spaghetti
0.4.2
record
2020-01-10 · diff ↗
0.4.1
record
2019-10-23 · diff ↗ ·
added 1 export
wald.test
0.3.1
record
2019-09-17 · diff ↗ ·
added 3 exports
nbglm, nbmixed, ptglm
0.2.1
record
2019-07-05 · diff ↗ ·
added 1 export
ranef
0.1.2
record
2019-06-14 · diff ↗
0.0.4
record
2019-05-26 · diff ↗
0.0.3
record
2019-05-06 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.0.2
record
2019-04-23 · diff ↗
0.0.1
record
2019-02-12
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-02-12
Total releases: 21 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 0.4 KB / 1 file
Download size: 144 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("ptmixed")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1177/1471082x20936017.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ptmixed version 1.1.3 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →