psSubpathway
Flexible Identification of Phenotype-Specific Subpathways
Description
A network-based systems biology tool for flexible identification of phenotype-specific subpathways in the cancer gene expression data with multiple categories (such as multiple subtype or developmental stages of cancer). Subtype Set Enrichment Analysis (SubSEA) and Dynamic Changed Subpathway Analysis (DCSA) are developed to flexible identify subtype specific and dynamic changed subpathways respectively. The operation modes include extraction of subpathways from biological pathways, inference of subpathway activities in the context of gene expression data, identification of subtype specific subpathways with SubSEA, identification of dynamic changed subpathways associated with the cancer developmental stage with DCSA, and visualization of the activities of resulting subpathways by using box plots and heat maps. Its capabilities render the tool could find the specific abnormal subpathways in the cancer dataset with multi-phenotype samples.
Downloads
211
Last 30 days
21631st
605
Last 90 days
2.2K
Last year
Trend: 0% (30d vs prior 30d)
CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 16, 2026
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(gi
...[truncated]...
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(gi
...[truncated]...
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 12, 2026
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(gi
...[truncated]...
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(gi
...[truncated]...
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
package dependencies
Package required but not available: ‘GSVA’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(gi
...[truncated]...
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(gi
...[truncated]...
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.