R Observatory: Metrics for priorityelasticnet version 1.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

priorityelasticnet

1.2.1

Comprehensive Analysis of Multi-Omics Data Using an Offset-Based Method

0packages depend

2.2Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Eunice CarrasquinhaFirst published 2025-01-133 releasesCRAN page ↗

Priority-ElasticNet extends the Priority-LASSO method (Klau et al. (2018) doi:10.1186/s12859-018-2344-6) by incorporating the ElasticNet penalty, allowing for both L1 and L2 regularization. This approach fits successive ElasticNet models for several blocks of (omics) data with different priorities, using the predicted values from each block as an offset for the subsequent block. It also offers robust options to handle block-wise missingness in multi-omics data, improving the flexibility and applicability of the model in the presence of incomplete datasets.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("priorityelasticnet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-priorityelasticnet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-priorityelasticnet

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-priorityelasticnet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-x86_64

Slowest check: 5.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

17

Dependencies · direct

Check history

ERROR2026-03-10
11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 14%

Downloads

2.2K

CRAN downloads in the past year

Rank #17,039 · ~6/day · ~185/mo

Releases R versions

Daily download trend is not available in this view yet.

19530 days

62790 days

2.2K1 year

Compare downloads with other packages →

Also on160 r2u17 autocran

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (17)

survivalglmnetutilscheckmate shiny tidyr dplyr caret pROC PRROC plotrix ggplot2 magrittr tibble broom cvms glmSparseNet

LinkingTo (0)

none

Suggests (4)

ipflasso rlang knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Eunice Carrasquinha

Author, Maintainer

Authors (3)

Eunice Carrasquinha

Author, Maintainer

Helena Mouriño

Author

Laila Qadir Musib

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2.1Latest
2026-02-19 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.2.0
2025-01-19 · diff ↗
0.1.0
2025-01-13
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-01-13
Total releases: 3 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 978 KB / 1 file
Download size: 2.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("priorityelasticnet")

Format

Carrasquinha, E., Mouriño, H., & Musib, L. Q. (2026). priorityelasticnet: Comprehensive Analysis of Multi-Omics Data Using an Offset-Based Method (Version 1.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.priorityelasticnet

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for priorityelasticnet version 1.2.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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