prepR4pcm
Prepare Data and Trees for Phylogenetic Comparative Methods
v1.0.0
·
Jun 25, 2026
·
MIT + file LICENSE
Description
Reconcile species names across datasets and phylogenetic trees for comparative biology workflows. Identifies mismatches due to formatting differences, taxonomic synonymy, and spelling errors. Produces detailed reports documenting how each name was resolved, which taxonomic authority was used, and what remains unresolved. Supports exact matching, name normalisation, synonym resolution via local taxonomic databases, and fuzzy matching for likely typos. Detects taxonomic splits and lumps. For methodological context, see Nakagawa et al. (2026) <doi:10.32942/X2468Z>.
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1.0.0
Jun 25, 2026