poppr
Genetic Analysis of Populations with Mixed Reproduction
Description
Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Downloads
6.5K
Last 30 days
1433rd
24.5K
Last 90 days
107.6K
Last year
Trend: -42.6% (30d vs prior 30d)
26
Last 30 days
127
Last 90 days
542
Last year
Trend: -40.9% (30d vs prior 30d)
5
Last 7 days
20
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
289
Last 30 days
926
Last 90 days
7K
Last year
Trend: -38.9% (30d vs prior 30d)
49
Last 30 days
177
Last 90 days
787
Last year
Trend: -24.6% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 7, 2026
CRAN incoming feasibility
Maintainer: ‘Zhian N. Kamvar <zkamvar@gmail.com>’ Reading Rd files failed with message: cannot open the connection
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Code
Structure
Lines of code
41,261
Files
196
Compiled share
11.8%
Has compiled src
Yes
Language breakdown
API
Exported functions
95
Internal functions
133
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.36
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
93.1%
\dontrun example ratio
14.8%
Roxygen coverage
98.9%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
21.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15.1
System requirements
–
C++ standard
–
License
GPL-2 | GPL-3
License flags
SPDX valid, OSI approved
History
Versions
47
First release
2013-04-25
Latest release
2025-08-24
Avg cadence
73 days
Cold removal rate
100%
Dep drift
18
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.