R Observatory: Metrics for pleiotest version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-01-15. Its history is shown below.

Reason: issues were not addressed in time

Details below reflect version 1.0.0, its last release before removal.

pleiotest

1.0.0Package record

Fast Sequential Pleiotropy Test

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Fernando AguateCRAN page ↗GitHub ↗

It performs a fast multi-trait genome-wide association analysis based on seemingly unrelated regressions. It tests for pleiotropic effects based on a series of Intersection-Union Wald tests. The package can handle large and unbalanced data and plot results.

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/pleiotest/pleiotest_1.0.0.tar.gz"
pkgFile <- "pleiotest_1.0.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("FerAguate/pleiotest")

Development version from FerAguate/pleiotest. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 394 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9
Examples that run: 100%3 run in a plain check
Exported functions with examples: 33%
Documented parameters: 100%
Return-value docs: 89%
Help pages citing references: 0%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on347 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (2)

Rcpp RColorBrewer

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Fernando Aguate

Author, Maintainer since 1.0.0 (2021)

Gustavo de los Campos

Author

Alexander Grueneberg

Contributor

Releases (1)

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-01-15
issues were not addressed in time
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.0
record
2021-03-18
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-03-18
Total releases: 1 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pleiotest")

Format

Aguate, F., de los Campos, G., & Grueneberg, A. (n.d.). pleiotest: Fast Sequential Pleiotropy Test (Version 1.0.0) [Computer software]. Retrieved October 24, 2026, from https://CRAN.R-project.org/package=pleiotest

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pleiotest version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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