phylospatial
Spatial Phylogenetic Analysis
v1.4.0
·
Apr 16, 2026
·
MIT + file LICENSE
Description
Analyze spatial phylogenetic diversity patterns. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 3, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 31, 2026
ERROR
r-devel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'alpha-diversity.Rmd' using rmarkdown --- re-building 'beta-diversity.Rmd' using rmarkdown --- finished re-building 'beta-diversity.Rmd' --- re-building 'phylospatial-data.Rmd' using rmarkdown --- f ...[truncated]... 'phylospatial-data.Rmd' --- re-building 'prioritization.Rmd' using rmarkdown --- finished re-building 'prioritization.Rmd' SUMMARY: processing the following file failed: 'alpha-diversity.Rmd' Error: Vignette re-building failed. Execution halted