phylospatial
Spatial Phylogenetic Analysis
Description
Analyze spatial phylogenetic diversity patterns. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.
Downloads
589
Last 30 days
6091st
1.9K
Last 90 days
7K
Last year
Trend: -0.5% (30d vs prior 30d)
1
Last 30 days
49
Last 90 days
159
Last year
Trend: -88.9% (30d vs prior 30d)
5
Last 7 days
18
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 3, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 31, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'alpha-diversity.Rmd' using rmarkdown --- re-building 'beta-diversity.Rmd' using rmarkdown --- finished re-building 'beta-diversity.Rmd' --- re-building 'phylospatial-data.Rmd' using rmarkdown --- f ...[truncated]... 'phylospatial-data.Rmd' --- re-building 'prioritization.Rmd' using rmarkdown --- finished re-building 'prioritization.Rmd' SUMMARY: processing the following file failed: 'alpha-diversity.Rmd' Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Code
Structure
Lines of code
5,361
Files
106
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
26
Internal functions
19
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.27
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
46.2%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2025-01-24
Latest release
2026-04-16
Avg cadence
49 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.