R Observatory: Metrics for phase1PRMD version 1.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

phase1PRMD

1.0.2Package record

Personalized Repeated Measurement Design for Phase I Clinical Trials

0packages depend

2.7Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Lu ZhangCRAN page ↗

Implements Bayesian phase I repeated measurement design that accounts for multidimensional toxicity endpoints and longitudinal efficacy measure from multiple treatment cycles. The package provides flags to fit a variety of model-based phase I design, including 1 stage models with or without individualized dose modification, 3-stage models with or without individualized dose modification, etc. Functions are provided to recommend dosage selection based on the data collected in the available patient cohorts and to simulate trial characteristics given design parameters. Yin, Jun, et al. (2017) doi:10.1002/sim.7134.

Changes in 1.0.2

Major changes

Remove the dependence on package phase1RMD

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("phase1PRMD", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-phase1prmd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-phase1PRMD

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-phase1PRMD

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Lu Zhang <luzhangstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "luzhangstat@gmail.com"),
               person(given = "Jun",
                      family = "Yin",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 2.1 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.2

READMEYes · 107 wordsVignettesNoNEWSYes · 33% structured · mentions 1.0.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16
Examples that run: 60%6 run in a plain check · 4 hold no code
Exported functions with examples: 86%
Documented parameters: 98%
Return-value docs: 86%
Help pages citing references: 0%

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #18,688 · ~7/day · ~225/mo

Releases R versions

Daily download trend is not available in this view yet.

23630 days

70790 days

2.7K1 year

Compare downloads with other packages →

Also on68 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing phase1PRMD adds 62 packages (33 with compiled code, 50 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (4)

R >= 3.0.0coda ggplot2stats

Imports (10)

rjags arrayhelpersMASSreshape2 plyr dplyr RColorBrewer gridExtra kableExtra knitr

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Lu Zhang

Jun Yin

Maintainer since 1.0.1 (2019)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.2Latest
record
2020-03-09 · current release · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.1
record
2019-02-03
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-02-03
Total releases: 2 / 7 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.0.0
Bundled data: 22 KB / 3 files
Download size: 65 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("phase1PRMD")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for phase1PRMD version 1.0.2 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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