R Observatory: Metrics for pguIMP version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pguIMP

0.1.1Package record

Visually Guided Preprocessing of Bioanalytical Laboratory Data

0packages depend

2.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Jorn LotschCRAN page ↗GitHub ↗Issues ↗

Reproducible cleaning of biomedical laboratory data using visualization, error correction, and transformation methods implemented as interactive R notebooks. A detailed description of the methods ca ben found in Malkusch, S., Hahnefeld, L., Gurke, R. and J. Lotsch. (2021) doi:10.1002/psp4.12704.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pguIMP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("JornLotsch/pguIMP")

Development version from JornLotsch/pguIMP. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pguimp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pguIMP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pguIMP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 8.4 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02

Show 4 earlier changesHide 4 earlier changes

ERROR11 OK, 1 ERROR2026-04-25
NOTE11 OK, 3 NOTE2026-04-06
ERROR10 OK, 3 NOTE, 1 ERROR2026-04-04
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

README· In the repository, left out of the releaseVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 33includes a package overview page
Examples that run: 90%9 run in a plain check · 1 hold no code
Exported functions with examples: 28%
Documented parameters: 94%
Return-value docs: 28%
Help pages citing references: 6%

How these are measured

Downloads

2.3K

CRAN downloads in the past year

Rank #15,750 · ~6/day · ~193/mo

Releases R versions

Daily download trend is not available in this view yet.

34630 days

77890 days

2.3K1 year

Compare downloads with other packages →

Also on81 r2u1 autocran

How downloads are counted

Repository

jornlotsch/pguimp ↗Account: JornLotsch

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-02-18

Responsiveness

not measured

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/jornlotsch/pguimp on 2026-10-18.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

37 external dependencies (excludes base and recommended)

Installing pguIMP adds 168 packages (91 with compiled code, 169 MB of source tarballs). Heaviest: stringi 11 MB, RWekajars 9.6 MB, TH.data 8.2 MB.

Depends (0)

none

Imports (37)

R6 DT DataVisualizations dbscan dplyr e1071 finalfit ggplot2 ggthemes Hmisc magrittrMASSRWeka VIM bbmlegridgridExtra mice nortest outliers plotly psych purrr rcompanion readr readxl rlang rmarkdown robust shinystatsstringr tibble tidyr tidyselecttoolswritexl

LinkingTo (0)

none

Suggests (4)

knitr devtools ellipsis roxygen2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Jorn Lotsch

Author, Maintainer since 0.1.1 (2026) · added in 0.1.1

Sebastian Malkusch

Author

Previously maintained by Sebastian Malkusch (0.0.0.1 to 0.0.0.3).

Listed in earlier versions (1)

Joern Loetsch

no longer listed · 0.0.0.1 to 0.0.0.3

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2026-02-20
0.1.1Latest
record
2026-02-20 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-11-14
email to the maintainer is undeliverable
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.0.0.3
record
2021-09-30 · diff ↗
0.0.0.2
record
2021-07-22 · diff ↗
0.0.0.1
record
2021-07-01
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-07-01
Total releases: 4 / 5 yrs
License: GPL (>= 3) OSI
Download size: 1.5 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("pguIMP")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1002/psp4.12704.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pguIMP version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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