R Observatory: Metrics for pguIMP version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pguIMP

0.1.1

Visually Guided Preprocessing of Bioanalytical Laboratory Data

0packages depend

1.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jorn LotschFirst published 2021-07-014 releasesCRAN page ↗GitHub ↗

Reproducible cleaning of biomedical laboratory data using visualization, error correction, and transformation methods implemented as interactive R notebooks. A detailed description of the methods ca ben found in Malkusch, S., Hahnefeld, L., Gurke, R. and J. Lotsch. (2021) doi:10.1002/psp4.12704.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pguIMP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("JornLotsch/pguIMP")

Development version from JornLotsch/pguIMP. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pguimp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pguIMP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pguIMP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.4 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

37

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-06
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-04
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 28%
References docs: 6%

Downloads

1.8K

CRAN downloads in the past year

Rank #18,005 · ~5/day · ~147/mo

Releases R versions

Daily download trend is not available in this view yet.

13630 days

60190 days

1.8K1 year

Compare downloads with other packages →

Also on135 r2u

Repository

GitHub ↗ jornlotsch/pguimp

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-02-18

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/jornlotsch/pguimp on 2026-08-16.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

37 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (37)

R6 DT DataVisualizations dbscan dplyr e1071 finalfit ggplot2 ggthemes Hmisc magrittrMASSRWeka VIM bbmlegridgridExtra mice nortest outliers plotly psych purrr rcompanion readr readxl rlang rmarkdown robust shinystatsstringr tibble tidyr tidyselecttoolswritexl

LinkingTo (0)

none

Suggests (4)

knitr devtools ellipsis roxygen2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Jorn Lotsch

Author, Maintainer · added in 0.1.1

Authors (2)

Jorn Lotsch

Author, Maintainer · added in 0.1.1

Sebastian Malkusch

Author

Listed in earlier versions (1)

Joern Loetsch

no longer listed · 0.0.0.1 to 0.0.0.3

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.1Latest
2026-02-20 · current release · diff ↗
unarchivedReturned to CRAN
2026-02-20
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-11-14
email to the maintainer is undeliverable
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.0.0.3
2021-09-30 · diff ↗
0.0.0.2
2021-07-22 · diff ↗
0.0.0.1
2021-07-01
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-07-01
Total releases: 4 / 5 yrs
License: GPL (>= 3) OSI
Download size: 1.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pguIMP")

Format

Lotsch, J., & Malkusch, S. (2026). pguIMP: Visually Guided Preprocessing of Bioanalytical Laboratory Data (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.pguIMP

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pguIMP version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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