R Observatory: Metrics for personalized version 0.2.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

personalized

0.2.8Package record

Estimation and Validation Methods for Subgroup Identification and Personalized Medicine

1packages depend

7.6Kdownloads / year

89.0%test coverage

13/13flavors OK

Overview

About

Maintained by Jared HulingCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides functions for fitting and validation of models for subgroup identification and personalized medicine / precision medicine under the general subgroup identification framework of Chen et al. (2017) doi:10.1111/biom.12676. This package is intended for use for both randomized controlled trials and observational studies and is described in detail in Huling and Yu (2021) doi:10.18637/jss.v098.i05.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("personalized", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jaredhuling/personalized")

Development version from jaredhuling/personalized. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-personalized

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-personalized

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-personalized

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.1 min · r-devel-linux-x86_64-debian-clang

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.8

READMEYes · 628 wordsVignettesYes · 4 · dynamicNEWSYes · does not mention 0.2.8Citation fileYes · cites a publicationWebsiteYes · pkgdown

Cites a JSS article

Help pages: 16
Examples that run: 100%12 run in a plain check
Exported functions with examples: 90%
Documented parameters: 97%
Return-value docs: 50%
Help pages citing references: 31%

Vignettes (4)

How these are measured

Downloads

7.6K

CRAN downloads in the past year

Rank #6,788 · ~21/day · ~632/mo

Releases R versions

Daily download trend is not available in this view yet.

48930 days

1.2K90 days

7.6K1 year

Compare downloads with other packages →

Also on117 r2u4 autocran

How downloads are counted

Repository

jaredhuling/personalized ↗Account: jaredhuling

36Stars

15Forks

2Open issues

0Open PRs

16Releases

639Commits

4Commit identities

subgroup-identificationprecision-medicineheterogeneity-of-treatment-effecttreatment-effectstreatment-scoringpersonalized-medicineindividualized-treatment-rulescausal-inference

639 commits · Last activity 2026-01-08 · +2.9% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 88%
Median days to close, 50 most recently updated closed issues: 2
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-01-13 · 322026-09-26 · 36

How these are measured

PracticesBeta

8 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/jaredhuling/personalized on 2026-10-11.

Continuous integration (3)

GitHub ActionsTravis CI (config file)AppVeyor

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-01-08

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing personalized adds 71 packages (39 with compiled code, 71 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (4)

glmnetmgcvggplot2 plotly

Imports (6)

survivalmethodskernlab foreach xgboost data.table

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown testthatnnet

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Depends 1

Depends, Imports or LinkingTo, most downloaded first

personalized2part

How these are counted

Code & Tests

Datasets

People & History

People (4)

Jared Huling

Author, Maintainer since 0.0.2 (2017)

Aaron Potvien

Contributor · added in 0.1.0

Alexandros Karatzoglou

Copyright holder · added in 0.2.0

Alex Smola

Copyright holder · added in 0.2.0

Releases (16)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.2.8Latest
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2026-01-08 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.2.7
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2022-06-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2.6
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2021-05-28 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.2.5
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2019-11-07 · diff ↗ ·
added 2 exports
create.augmentation.function, create.propensity.function
0.2.4
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2019-05-22 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.2.3
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2019-02-07 · diff ↗
0.2.2
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2018-11-14 · diff ↗
0.2.1
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2018-09-19 · diff ↗

Show 10 earlier eventsHide 10 earlier events

0.2.0
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2018-09-18 · diff ↗ ·
added 2 exports
treat.effects, treatment.effects
R
R 3.5.0 released · 2018-04-23
0.1.5
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2018-04-11 · diff ↗
0.1.4
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2018-03-09 · diff ↗
0.1.3
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2018-01-30 · diff ↗
0.1.2
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2017-11-28 · diff ↗
0.1.1
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2017-10-25 · diff ↗ ·
added 1 export
weighted.ksvm
0.1.0
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2017-09-26 · diff ↗
0.0.2
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2017-06-12
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-06-12
Total releases: 16 / 9 yrs
License: GPL-2 OSI
Bundled data: 11 KB / 1 file
Download size: 1.0 MB

Appears in task views

Causal Inference

Cite

Cite this package

Run in R for the authors' entry:

citation("personalized")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v098.i05, 10.1111/biom.12676.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for personalized version 0.2.8 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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