R Observatory: Metrics for permGPU version 0.15

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-11-05. Its history is shown below.

Reason: check problems were not corrected in time

Details below reflect version 0.15, its last release before removal.

permGPU

0.15Package record

Using GPUs in Statistical Genomics

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Ivo D. ShterevCRAN page ↗

Can be used to carry out permutation resampling inference in the context of RNA microarray studies.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/permGPU/permGPU_0.15.tar.gz"
pkgFile <- "permGPU_0.15.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.15) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.15

READMENoVignettesNoNEWSYes · 33% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 6includes a package overview page
Examples that run: 100%5 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 50%

How these are measured

Downloads

permGPU Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (6)

R >= 2.15.3Biobase RUnit foreachsurvivalmethods

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (8)

Ivo D.

Author, Maintainer · added in 0.14.9

Kouros Owzar

Author

Sin-Ho Jung

Author

Stephen L.

Author · added in 0.14.9

Brian J.

Contributor, Copyright holder · added in 0.14.9

Kenneth Wilder

Contributor, Copyright holder · added in 0.14.9

Romain Francois

Contributor, Copyright holder · added in 0.14.9

Dirk Eddelbuettel

Contributor, Copyright holder · added in 0.14.9

Maintainer since 0.14.3 (2012)

Listed in earlier versions (2)

Stephen L. George

no longer listed · 0.14.3 to 0.14.8

Ivo D. Shterev

no longer listed · 0.14.3 to 0.14.8

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2021-11-05
check problems were not corrected in time
R
R 4.1.0 released · 2021-05-18
0.15
record
2021-02-10 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.14.9
record
2016-02-23 · diff ↗
0.14.8
record
2016-01-13 · diff ↗
0.14.7
record
2016-01-07 · diff ↗
archivedRemoved from CRAN
2015-11-21
check problems were not corrected despite reminders. Earlier versions removed on 2016-01-13 due to policy violations
R
R 3.2.0 released · 2015-04-16
0.14.6
record
2014-07-11 · diff ↗
0.14.5
record
2014-06-27 · diff ↗

Show 5 earlier eventsHide 5 earlier events

0.14.4
record
2014-06-13 · diff ↗
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
0.14.3
record
2012-12-07
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-12-07
Total releases: 8 / 14 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.15.3

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("permGPU")

Format

D., I., Owzar, K., Jung, S., L., S., J., B., Wilder, K., Francois, R., & Eddelbuettel, D. (n.d.). permGPU: Using GPUs in Statistical Genomics (Version 0.15) [Computer software]. Retrieved October 24, 2026, from https://CRAN.R-project.org/package=permGPU

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for permGPU version 0.15 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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