R Observatory: Metrics for penalizedclr version 2.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

penalizedclr

2.0.0Package record

Integrative Penalized Conditional Logistic Regression

0packages depend

2.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Vera Djordjilovi'cCRAN page ↗

Implements L1 and L2 penalized conditional logistic regression with penalty factors allowing for integration of multiple data sources. Implements stability selection for variable selection.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("penalizedclr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-penalizedclr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-penalizedclr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-penalizedclr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.0

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 7
Examples that run: 100%4 run in a plain check
Exported functions with examples: 80%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 29%

Vignettes (1)

<tt>penalizedclr</tt>: an R package for penalized conditional logistic regression HTML

How these are measured

Downloads

2.3K

CRAN downloads in the past year

Rank #22,344 · ~6/day · ~189/mo

Releases R versions

Daily download trend is not available in this view yet.

22130 days

59190 days

2.3K1 year

Compare downloads with other packages →

Also on70 r2u2 autocran

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing penalizedclr adds 4 packages (4 with compiled code, 3.2 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppArmadillo 1.0 MB, penalized 374 KB.

Depends (0)

none

Imports (4)

penalizedsurvivalclogitL1stats

LinkingTo (0)

none

Suggests (4)

parallelknitr rmarkdown tidyverse

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Vera Djordjilovi'c

Author, Maintainer since 0.1.0 (2021)

Erica Ponzi

Author

Listed in earlier versions (1)

Vera Djordjilovi\'c

no longer listed · 0.1.0 to 2.0.0

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
unarchivedReturned to CRAN
2023-07-20
2.0.0Latest
record
2023-07-20 · current release · diff ↗ ·
added 1 export
default.pf
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2022-04-04
'coercion to logical' errors were not corrected in time See https://www.stats.ox.ac.uk/pub/bdr/LENGTH1/
R
R 4.1.0 released · 2021-05-18
0.1.0
record
2021-04-22
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-04-22
Total releases: 2 / 5 yrs
License: MIT + file LICENSE OSI
Download size: 73 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("penalizedclr")

Format

Djordjilovi'c, V., & Ponzi, E. (2023). penalizedclr: Integrative Penalized Conditional Logistic Regression (Version 2.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.penalizedclr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for penalizedclr version 2.0.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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