R Observatory: Metrics for pedSimulate version 1.4.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pedSimulate

1.4.3

Pedigree, Genetic Merit, Phenotype, and Genotype Simulation

0packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Mohammad Ali NilforooshanFirst published 2020-04-1516 releasesCRAN page ↗GitHub ↗

Simulate pedigree, genetic merits and phenotypes with random/non-random matings followed by random/non-random selection with different intensities and patterns in males and females. Genotypes can be simulated for a given pedigree, or an appended pedigree to an existing pedigree with genotypes. Mrode, R. A. (2005) <ISBN:9780851989969, 0851989969>; Nilforooshan, M.A. (2022) doi:10.37496/rbz5120210131.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pedSimulate", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("nilforooshan/pedSimulate")

Development version from nilforooshan/pedSimulate. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pedsimulate

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pedSimulate

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pedSimulate

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 44 s · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

0

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-08
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-07
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 294 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 13%

Downloads

3.1K

CRAN downloads in the past year

Rank #17,124 · ~9/day · ~259/mo

Releases R versions

Daily download trend is not available in this view yet.

14530 days

63390 days

3.1K1 year

Compare downloads with other packages →

Also on100 r2u9 autocran

Repository

GitHub ↗ nilforooshan/pedsimulate

3Stars

0Forks

0Open issues

0Open PRs

15Releases

24Commits

1Contributors

License LGPL-3.0 · 24 commits · Last activity 2024-09-17 · 0% stars, 30d

Stars over time

2023-01-23 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/nilforooshan/pedsimulate on 2026-08-09.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Mohammad Ali Nilforooshan

Author, Maintainer

Authors (1)

Mohammad Ali Nilforooshan

Author, Maintainer

Package Timeline

16 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.4.3Latest
2023-09-26 · current release · diff ↗
1.4.1
2023-09-24 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.4.0
2022-10-11 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.3.2
2022-03-22 · diff ↗
1.3.1
2022-01-14 · diff ↗
1.3.0
2021-12-08 · diff ↗
1.2.1
2021-10-17 · diff ↗
1.2.0
2021-09-06 · diff ↗
1.1.1
2021-08-18 · diff ↗
1.1.0
2021-07-10 · diff ↗
1.0.1
2021-06-30 · diff ↗

Show 8 earlier events

1.0.0
2021-06-17 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.2
2021-02-22 · diff ↗
0.1.1
2021-01-07 · diff ↗
0.0.4
2020-04-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.0.3
2020-04-15
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-04-15
Total releases: 16 / 6 yrs
License: GPL-3 OSI
Download size: 12 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pedSimulate")

Format

Nilforooshan, M. A. (2023). pedSimulate: Pedigree, Genetic Merit, Phenotype, and Genotype Simulation (Version 1.4.3) [Computer software]. https://doi.org/10.32614/CRAN.package.pedSimulate

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pedSimulate version 1.4.3 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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