R Observatory: Metrics for patientProfilesVis version 2.0.10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

patientProfilesVis

2.0.10Package record

Visualization of Patient Profiles

0packages dependsuggested by 1

7.5Kdownloads / year

85.3%test coverage

8/13flavors OK

Overview

About

Maintained by Laure CougnaudCRAN page ↗GitHub ↗Issues ↗

Creation of patient profile visualizations for exploration, diagnostic or monitoring purposes during a clinical trial. These static visualizations display a patient-specific overview of the evolution during the trial time frame of parameters of interest (as laboratory, ECG, vital signs), presence of adverse events, exposure to a treatment; associated with metadata patient information, as demography, concomitant medication. The visualizations can be tailored for specific domain(s) or endpoint(s) of interest. Visualizations are exported into patient profile report(s) or can be embedded in custom report(s).

Changes in 2.0.10

fixes for ggplot2 4.0.0

From inst/NEWS in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("patientProfilesVis", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("openanalytics/patientProfilesVis")

Development version from openanalytics/patientProfilesVis. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-patientprofilesvis

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-patientProfilesVis

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-patientProfilesVis

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Base package in Suggests/Enhances imported in NAMESPACE:
  ‘grDevices’

r-devel-windows-x86_64

Base package in Suggests/Enhances imported in NAMESPACE:
  'grDevices'

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘patientProfilesVis-common-args.Rd’ ‘patientProfilesVis-palette.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 6.9 min · r-oldrel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTENow
NOTE12 OK, 1 NOTE2026-07-11
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.10

READMENoVignettesYes · 2 · dynamicNEWSYes · 100% structured · mentions 2.0.10Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 42
Examples that run: 100%1 run in a plain check
Exported functions with examples: 8%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

7.5K

CRAN downloads in the past year

Rank #7,396 · ~21/day · ~629/mo

Releases R versions

Daily download trend is not available in this view yet.

46130 days

1.2K90 days

7.5K1 year

Compare downloads with other packages →

Also on100 r2u7 autocran

How downloads are counted

Repository

openanalytics/patientprofilesvis ↗Organization: openanalytics

8Stars

8Forks

5Open issues

0Open PRs

0Releases

450Commits

4Commit identities

450 commits · Last activity 2025-09-04 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 14
Median days to close, 50 most recently updated closed PRs: 82

Stars over time

2024-09-11 · 72026-07-07 · 8

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/openanalytics/patientprofilesvis on 2026-10-11.

Reproducibility and dev environment (1)

Dockerfile

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Installing patientProfilesVis adds 72 packages (36 with compiled code, 64 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (0)

none

Imports (13)

clinUtils ggplot2 plyr cowplottoolsreshape2 knitrgridstringrparallelgridExtra scalesutils

LinkingTo (0)

none

Suggests (8)

pander shiny testthatgrDevicesrmarkdown gtable pdftools viridisLite

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

clinDataReview

How these are counted

Code & Tests

People & History

People (3)

Laure Cougnaud

Author, Maintainer since 2.0.0 (2021)

Open Analytics

Copyright holder

Margaux Faes

Reviewer · added in 2.0.2

tests

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.0.10Latest
record
2025-09-05 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.0.9
record
2024-06-18 · diff ↗
2.0.8
record
2024-06-13 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.0.7
record
2024-03-09 · diff ↗
2.0.6
record
2023-12-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.0.5
record
2022-11-18 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.0.2
record
2021-09-28 · diff ↗
2.0.1
record
2021-07-13 · diff ↗
2.0.0
record
2021-06-14
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-14
Total releases: 9 / 5 yrs
License: MIT + file LICENSE OSI
Download size: 4.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("patientProfilesVis")

Format

Cougnaud, L., Open Analytics, & Faes, M. (2025). patientProfilesVis: Visualization of Patient Profiles (Version 2.0.10) [Computer software]. https://doi.org/10.32614/CRAN.package.patientProfilesVis

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for patientProfilesVis version 2.0.10 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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