R Observatory: Metrics for parseRPDR version 1.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

parseRPDR

1.1.2

Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

0packages depend

3.6Kdownloads / year

24.0%test coverage

13/13checks pass

Overview

About

Maintained by Marton KolossvaryFirst published 2021-03-1515 releasesCRAN page ↗GitHub ↗

Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R. The package also provides helper functions to manipulate data and execute common procedures such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database from the downloaded images. All functionalities are parallelized for fast and efficient analyses.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("parseRPDR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("martonkolossvary/parseRPDR")

Development version from martonkolossvary/parseRPDR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-parserpdr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-parseRPDR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-parseRPDR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.59

24.0%

Coverage · measured lines

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 5,044 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 98%
Return-value docs: 100%
References docs: 0%

Downloads

3.6K

CRAN downloads in the past year

Rank #13,757 · ~10/day · ~301/mo

Releases R versions

Daily download trend is not available in this view yet.

15130 days

74990 days

3.6K1 year

Compare downloads with other packages →

Also on96 r2u19 autocran

Repository

GitHub ↗ martonkolossvary/parserpdr

11Stars

1Forks

0Open issues

0Open PRs

0Releases

8Commits

1Contributors

License AGPL-3.0 · 8 commits · Last activity 2025-01-26

Stars over time

2025-01-11 · 112026-07-07 · 11

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/martonkolossvary/parserpdr on 2026-08-09.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (8)

data.table stringr readr parallelly foreach future doFuture progressr

LinkingTo (0)

none

Suggests (5)

testthat reticulate knitr rmarkdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Marton Kolossvary

Author, Maintainer

Authors (1)

Marton Kolossvary

Author, Maintainer

Package Timeline

15 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.2Latest
2025-01-19 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.1
2024-04-03 · diff ↗
1.1.0
2024-01-09 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.1
2023-03-31 · diff ↗
1.0.0
2023-03-17 · diff ↗
0.2.4
2023-01-29 · diff ↗
0.2.3
2022-06-07 · diff ↗
0.2.2
2022-05-30 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2.1
2021-09-10 · diff ↗
0.2.0
2021-07-24 · diff ↗
0.1.2
2021-06-06 · diff ↗

Show 6 earlier events

0.1.1
2021-05-24 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.0
2021-05-10 · diff ↗
0.0.2
2021-04-16 · diff ↗
0.0.1
2021-03-15
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-03-15
Total releases: 15 / 5 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 4.0
Download size: 160 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("parseRPDR")

Format

Kolossvary, M. (2025). parseRPDR: Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries (Version 1.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.parseRPDR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for parseRPDR version 1.1.2 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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