R Observatory: Metrics for pARI version 1.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pARI

1.1.3

Permutation-Based All-Resolutions Inference

1packages depend

2.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Angela AndreellaFirst published 2021-11-175 releasesCRAN page ↗GitHub ↗

Computes the All-Resolution Inference method in the permutation framework, i.e., simultaneous lower confidence bounds for the number of true discoveries. doi:10.1002/sim.9725.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pARI", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("angeella/pARI")

Development version from angeella/pARI. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pari

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pARI

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pARI

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.3 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 522 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 67%
Documented parameters: 100%
Return-value docs: 100%
References docs: 54%

Downloads

2.8K

CRAN downloads in the past year

Rank #16,987 · ~8/day · ~231/mo

Releases R versions

Daily download trend is not available in this view yet.

19130 days

64790 days

2.8K1 year

Compare downloads with other packages →

Also on387 r2u15 autocran

Repository

GitHub ↗ angeella/pari

4Stars

0Forks

0Open issues

0Open PRs

2Releases

277Commits

1Contributors

cluster-maparipermutationfslcopesdiscoveriesselective-inferencesimultaneous-confidence-bounds

277 commits · Last activity 2025-09-23

Stars over time

2021-08-11 · 42026-07-07 · 4

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/angeella/pari on 2026-08-23.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (9)

Rcpp matrixStats RNiftistatsgrDevicesgraphicsplyr ARIbrainutils

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

sumSome

Code & Tests

People & History

People (1)

Maintainer (1)

Angela Andreella

Author, Maintainer

Authors (1)

Angela Andreella

Author, Maintainer

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.3Latest
2025-09-23 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.2
2024-09-06 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.1.1
2022-01-10 · diff ↗
1.1.0
2021-11-18 · diff ↗
1.0.0
2021-11-17
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-11-17
Total releases: 5 / 5 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Download size: 42 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pARI")

Format

Andreella, A. (2025). pARI: Permutation-Based All-Resolutions Inference (Version 1.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.pARI

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pARI version 1.1.3 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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