R Observatory: Metrics for overlap version 0.3.9

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

overlap

0.3.9Package record

Estimates of Coefficient of Overlapping for Animal Activity Patterns

1packages dependsuggested by 1

19.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Liz A.D. CampbellCRAN page ↗

Provides functions to fit kernel density functions to data on temporal activity patterns of animals; estimate coefficients of overlapping of densities for two species; and calculate bootstrap estimates of confidence intervals. As in Ridout and Linkie (2009) doi:10.1198/jabes.2009.08038.

Changes in 0.3.9

Revised example for 'sunTime' to reset user's par() after running and fix error in plotting

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("overlap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-overlap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-overlap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-overlap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.5 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.9

READMEYes · 65 wordsVignettesNoNEWSYes · 33% structured · mentions 0.3.9Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 13includes a package overview page
Examples that run: 85%11 run in a plain check (1 of them under a condition) · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 95%
Return-value docs: 100%
Help pages citing references: 46%

How these are measured

Downloads

19.9K

CRAN downloads in the past year

Rank #3,180 · ~55/day · ~1.7K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.5K30 days

3.7K90 days

19.9K1 year

Compare downloads with other packages →

Also on403 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing overlap adds 10 packages (8 with compiled code, 17 MB of source tarballs). Heaviest: sf 9.3 MB, s2 2.8 MB, Rcpp 1.8 MB.

Depends (1)

suntools

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

sp

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Suggested by 1

Depends, Imports or LinkingTo, most downloaded first

ct

Suggests, most downloaded first

camtrapR

How these are counted

Code & Tests

Datasets

People & History

People (3)

Liz A.D. Campbell

Author, Maintainer since 0.1.0 (2013)

Mike Meredith

Author

Martin Ridout

Author

Listed in earlier versions (2)

the CRAN team

no longer listed · 0.3.4.1

Liz A.D.

no longer listed · 0.3.9

Releases (15)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
unarchivedReturned to CRAN
2024-01-19
archivedRemoved from CRAN
2023-12-15
orphanedOrphaned by its maintainer
2023-11-17
Neither the maintainer address nor that given on github are usable
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 16 earlier eventsHide 16 earlier events

3.0.3Latest
record
2014-02-23 · current release · diff ↗
3.0.2
record
2013-08-05 · diff ↗
0.3.9
record
2024-01-19 · diff ↗ ·
added 1 export
sunTime
0.3.4.1
record
2023-11-18 · diff ↗ ·
removed 1 export
sunTime
0.3.4
record
2021-05-17 · diff ↗
0.3.3
record
2020-05-22 · diff ↗ ·
added 1 export
bootstrap
0.3.2
record
2018-05-03 · diff ↗ ·
added 1 export
sunTime
0.3.0
record
2017-05-27 · diff ↗
0.2.7
record
2017-03-01 · diff ↗
0.2.6
record
2016-02-14 · diff ↗
0.2.4
record
2014-10-14 · diff ↗
0.2.3
record
2014-06-06 · diff ↗
0.2.2
record
2014-02-23 · diff ↗
0.2.0
record
2013-08-05 · diff ↗
0.1.0
record
2013-05-21
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2013-05-21
Total releases: 15 / 13 yrs
License: GPL (>= 3) OSI
Bundled data: 7.7 KB / 3 files
Download size: 329 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("overlap")

Format

Campbell, L. A. D., Meredith, M., & Ridout, M. (2024). overlap: Estimates of Coefficient of Overlapping for Animal Activity Patterns (Version 0.3.9) [Computer software]. https://doi.org/10.32614/CRAN.package.overlap

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for overlap version 0.3.9 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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