R Observatory: Metrics for otargen version 2.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

otargen

2.0.1

Access Open Target

0packages depend

3Kdownloads / year

78.7%test coverage

13/13checks pass

Overview

About

Maintained by Amir FeiziFirst published 2023-06-236 releasesCRAN page ↗GitHub ↗

Interact seamlessly with Open Target GraphQL endpoint to query and retrieve tidy data tables, facilitating the analysis of gene, disease, drug, and genetic data. For more information about the Open Target API (https://platform.opentargets.org/api).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("otargen", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("amirfeizi/otargen")

Development version from amirfeizi/otargen. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-otargen

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-otargen

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-otargen

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.13

78.7%

Coverage · measured lines

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-19
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-18
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-01
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-28
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 269 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 3%

Downloads

3K

CRAN downloads in the past year

Rank #8,608 · ~8/day · ~246/mo

Releases R versions

Daily download trend is not available in this view yet.

21730 days

1.1K90 days

3K1 year

Compare downloads with other packages →

Also on123 r2u26 autocran

Repository

GitHub ↗ amirfeizi/otargen

15Stars

4Forks

1Open issues

1Open PRs

6Releases

287Commits

5Contributors

bioinformatics-toolcomputational-biologygeneitcsopen-target

287 commits · Last activity 2026-07-30 · 0% stars, 30d

Stars over time

2025-07-19 · 122026-07-07 · 15

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/amirfeizi/otargen on 2026-08-23.

Continuous integration (2)

GitHub ActionsGitLab CI

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.0

Imports (8)

ghql cli dplyr jsonlite magrittr tibble tidyr httr

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Amir Feizi

Author, Maintainer

Authors (1)

Amir Feizi

Author, Maintainer

Listed in earlier versions (1)

Kamalika Ray

no longer listed · 1.0.0 to 1.1.5

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.1Latest
2026-05-23 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2.0.0
2025-07-15 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.5
2024-09-22 · diff ↗
unarchivedReturned to CRAN
2024-09-22
archivedRemoved from CRAN
2024-08-20
policy violation On Internet access. Most recently: #── Error ('test-studiesAndLeadVariantsForGeneByL2G.R:3:3'): test studiesAndLeadVariantsForGeneByL2G works ── #Error: Bad Gateway (HTTP 502)
R
R 4.4.0 released · 2024-04-24
1.1.1
2024-02-21 · diff ↗
1.1.0
2023-12-12 · diff ↗
1.0.0
2023-06-23
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-06-23
Total releases: 6 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.1.0
Download size: 752 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("otargen")

Format

Feizi, A. (2026). otargen: Access Open Target (Version 2.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.otargen

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for otargen version 2.0.1 [Data set]. HJJB, LLC. Data release v2026-08-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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