R Observatory: Metrics for osdc version 0.11.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

osdc

0.11.3

Open Source Diabetes Classifier for Danish Registers

1packages depend

4.2Kdownloads / year

98.2%test coverage

13/13checks pass

Overview

About

Maintained by Luke William JohnstonFirst published 2025-12-103 releasesCRAN page ↗GitHub ↗

The algorithm first identifies a population of individuals from Danish register data with any type of diabetes as individuals with two or more inclusion events. Then, it splits this population into individuals with either type 1 diabetes or type 2 diabetes by identifying individuals with type 1 diabetes and classifying the remainder of the diabetes population as having type 2 diabetes.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("osdc", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("steno-aarhus/osdc")

Development version from steno-aarhus/osdc. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-osdc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-osdc

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-osdc

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.16

98.2%

Coverage · measured lines

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-23
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-20
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 8 earlier snapshots

ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-15
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-18
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-12
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 414 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

4.2K

CRAN downloads in the past year

Rank #6,199 · ~12/day · ~353/mo

Releases R versions

Daily download trend is not available in this view yet.

24630 days

1.3K90 days

4.2K1 year

Compare downloads with other packages →

Also on71 r2u17 autocran

Repository

GitHub ↗ steno-aarhus/osdc

4Stars

2Forks

31Open issues

0Open PRs

66Releases

881Commits

6Contributors

softwarer-packagewebsitediabetes-classificationopen-source

881 commits · Last activity 2026-08-11 · 0% stars, 30d

Stars over time

2023-05-17 · 12026-07-07 · 4

Repository practices

Upstream repositoryBeta

10 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/steno-aarhus/osdc on 2026-08-09.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Research and citation (1)

CITATION.cff

Show all practices

Automation and maintenance (1)

pre-commit

Lint, format, editor (3)

AirVS CodeRStudio project

Governance and community (2)

PR templateCODEOWNERS

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

23 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2.0

Imports (14)

checkmate cli codeCollection dplyr dbplyr (>= 2.5.1)duckplyr fabricatr lifecycle lubridate purrr rlangstatstidyselectutils

LinkingTo (0)

none

Suggests (11)

glue knitr quarto rmarkdown spelling stringr testthat tidyr tibble arrow DBI

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

fastreg

Code & Tests

People & History

People (5)

Maintainer (1)

Luke William Johnston

Author, Maintainer

Authors (3)

Luke William Johnston

Author, Maintainer

Signe Kirk Brødbæk

Author

Anders Aasted Isaksen

Author

Copyright holders (2)

Aarhus University

Copyright holder

Steno Diabetes Center Aarhus

Copyright holder

Listed in earlier versions (3)

Anders Aasted

no longer listed · 0.9.17 to 0.11.3

Signe Kirk

no longer listed · 0.9.17 to 0.11.3

Luke William

no longer listed · 0.9.17 to 0.11.3

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

0.11.3Latest
2026-06-04 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.9.19
2026-01-12 · diff ↗
0.9.17
2025-12-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-12-10
Total releases: 3 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.2.0
Download size: 226 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("osdc")

The authors publish a CITATION.cff, so they have said how they want this cited. Run citation() and use what it gives you.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for osdc version 0.11.3 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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