R Observatory: Metrics for oreo version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

oreo

1.0Package record

Large Amplitude Oscillatory Shear (LAOS)

0packages depend

2.6Kdownloads / year

–test coverage

0/13flavors OK

Overview

About

Maintained by Serena BerrettaCRAN page ↗

The Sequence of Physical Processes (SPP) framework is a way of interpreting the transient data derived from oscillatory rheological tests. It is designed to allow both the linear and non-linear deformation regimes to be understood within a single unified framework. This code provides a convenient way to determine the SPP framework metrics for a given sample of oscillatory data. It will produce a text file containing the SPP metrics, which the user can then plot using their software of choice. It can also produce a second text file with additional derived data (components of tangent, normal, and binormal vectors), as well as pre-plotted figures if so desired. It is the R version of the Package SPP by Simon Rogers Group for Soft Matter (Simon A. Rogers, Brian M. Erwin, Dimitris Vlassopoulos, Michel Cloitre (2011) doi:10.1122/1.3544591).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("oreo", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-oreo

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-oreo

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-oreo

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) plotColeCole.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotDeltaStrain.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotDisp.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotFft.Rd:23: Lost braces; missing escapes or markup?
    23 | {No return value}
       | ^
checkRd: (-1) plotGpdot.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotPAV.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotSpeedGp.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Speed-G'_{t} plot}
       |                 ^
checkRd: (-1) plotSpeedGp.Rd:24: Lost braces; missing escapes or markup?
    24 | create Speed-G'_{t} plot
       |                 ^
checkRd: (-1) plotSpeedGp.Rd:26: Lost braces; missing escapes or markup?
 
...[truncated]...
) plotSpeedGpp.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotStrain.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotStressRate.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^
checkRd: (-1) plotStressStrain.Rd:25: Lost braces; missing escapes or markup?
    25 | {No return value}
       | ^
checkRd: (-1) plotStressTime.Rd:23: Lost braces; missing escapes or markup?
    23 | {No return value}
       | ^
checkRd: (-1) plotTimeRate.Rd:25: Lost braces; missing escapes or markup?
    25 | {No return value}
       | ^
checkRd: (-1) plotTimeStrain.Rd:25: Lost braces; missing escapes or markup?
    25 | {No return value}
       | ^
checkRd: (-1) plotTimeStress.Rd:25: Lost braces; missing escapes or markup?
    25 | {No return value}
       | ^
checkRd: (-1) plotVGP.Rd:21: Lost braces; missing escapes or markup?
    21 | {No return value}
       | ^

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘gridExtra’ ‘scales’ ‘tools’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 1.2 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTENow
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 23
Examples that run: 11%2 run in a plain check · 17 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 86%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 70%

How these are measured

Downloads

2.6K

CRAN downloads in the past year

Rank #19,000 · ~7/day · ~216/mo

Releases R versions

Daily download trend is not available in this view yet.

23930 days

69890 days

2.6K1 year

Compare downloads with other packages →

Also on70 r2u3 autocran

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing oreo adds 29 packages (13 with compiled code, 30 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, Rcpp 1.8 MB.

Depends (1)

R >= 3.5.0

Imports (8)

gridExtra ggplot2 openxlsxtoolsspectral pracma fftwtools scales

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Serena Berretta

Author, Maintainer since 1.0 (2021)

Giorgio Luciano

Author

Kristian Hovde Liland

Contributor

Simon Rogers

Contributor

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0Latest
record
2021-03-10 · current release
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-03-10
Total releases: 1 / 5 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 18 KB / 1 file
Download size: 32 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("oreo")

Format

Berretta, S., Liland, K. H., Luciano, G., & Rogers, S. (2021). oreo: Large Amplitude Oscillatory Shear (LAOS) (Version 1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.oreo

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for oreo version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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