R Observatory: Metrics for optrcdmaeAT version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

optrcdmaeAT

1.0.1

Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments

0packages depend

155.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Dibaba Bayisa GemechuFirst published 2017-04-122 releasesCRAN page ↗

Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2018) doi:10.1080/03610918.2018.1429617 algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("optrcdmaeAT", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-optrcdmaeat

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-optrcdmaeAT

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 2.0 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

4

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 50%

Downloads

155.2K

CRAN downloads in the past year

Rank #7,953 · ~425/day · ~12.9K/mo

Releases R versions

Daily download trend is not available in this view yet.

21730 days

1.1K90 days

155.2K1 year

Compare downloads with other packages →

Also on121 r2u70 c2d4u

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (5)

R >= 3.3.2MASSMatrixigraphtcltk

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Dibaba Bayisa Gemechu

Author, Maintainer

Authors (3)

Dibaba Bayisa Gemechu

Author, Maintainer

Legesse Kassa Debusho

Author

Linda Haines

Author · added in 1.0.1

Listed in earlier versions (1)

and Linda Haines

no longer listed · 1.0.0

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.1Latest
2025-05-25 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0.0
2017-04-12
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-04-12
Total releases: 2 / 9 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.3.2
Download size: 17 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Design of Experiments (DoE) & Analysis of Experimental Data

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("optrcdmaeAT")

Format

Gemechu, D. B., Debusho, L. K., & Haines, L. (2025). optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments (Version 1.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.optrcdmaeAT

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for optrcdmaeAT version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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