R Observatory: Metrics for optCluster version 1.3.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-06-22. Its history is shown below.

Reason: requires archived package 'MBCluster.Seq'

Details below reflect version 1.3.2, its last release before removal.

optCluster

1.3.2Package record

Determine Optimal Clustering Algorithm and Number of Clusters

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Michael SekulaCRAN page ↗

Cluster analysis using statistical and biological validation measures for both continuous and count data.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/optCluster/optCluster_1.3.2.tar.gz"
pkgFile <- "optCluster_1.3.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.3.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.2

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 8
Examples that run: 14%1 run in a plain check · 6 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 94%
Return-value docs: 40%
Help pages citing references: 50%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on35 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0

Imports (11)

grDevicesgraphicsstatsutilsRankAggreg mclustmethodsclustergplots kohonen MBCluster.Seq

LinkingTo (0)

none

Suggests (4)

Biobase annotate GO.db org.At.tair.db

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Michael Sekula

Contributor

Somnath Datta

Contributor

Susmita Datta

Contributor

Maintainer since 1.0.0 (2015)

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-06-22
requires archived package 'MBCluster.Seq'
R
R 4.2.0 released · 2022-04-22
1.3.2
record
2022-04-16 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.3.0
record
2020-04-01 · diff ↗
1.2.0
record
2019-12-10 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.1.1
record
2017-03-13 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.1.0
record
2016-03-26 · diff ↗
1.0.1
record
2015-10-19 · diff ↗
1.0.0
record
2015-05-20

Show 1 earlier eventHide 1 earlier event

R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-05-20
Total releases: 7 / 11 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.0
Bundled data: 3.2 KB / 1 file

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("optCluster")

Format

Sekula, M., Datta, S., & Datta, S. (n.d.). optCluster: Determine Optimal Clustering Algorithm and Number of Clusters (Version 1.3.2) [Computer software]. Retrieved October 26, 2026, from https://CRAN.R-project.org/package=optCluster

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for optCluster version 1.3.2 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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