This package was removed from CRAN on 2023-08-19. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 0.2, its last release before removal.

omopr

0.2

OMOP CDM Databases using the Tidyverse

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Darren Wilkinson1 releasesCRAN page ↗

Utility functions for querying electronic health record (EHR) data in 'OMOP' Common Data Model https://www.ohdsi.org/data-standardization/the-common-data-model/ databases using a 'tidyverse' approach based on 'dbplyr' lazy queries. This allows efficient in-database querying and data wrangling without explicit writing of 'SQL' queries.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/omopr/omopr_0.2.tar.gz"
pkgFile <- "omopr_0.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omopr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-omopr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

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Also on65 r2u9 autocran

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (5)

R >= 3.0.0dbplyr dplyr DBI RSQLite

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 105 (36%)Rd 97 (33%)Vignettes 89 (31%)

Code characteristics

Cyclomatic complexity: 2.5 median / 8 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

4 3 exported

Complexity

3.5 avg / 8 max

Call network

4 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Other (1)

Darren Wilkinson

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-08-19
email to the maintainer is undeliverable
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2
2020-06-25
R
R 4.0.0 released · 2020-04-24

Package metadata

Total releases: 1
License: LGPL-3 OSI
Minimum R: ≥ 3.0.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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